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…nd record them Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
… is compared with Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
…nd the test that every historical schema converges Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
…t the API on a database that is behind Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
…therwise lose A row whose assay_type held a current member beside snps was rewritten to genetic_variants alone, and chemical_name was dropped whether or not it held anything. Both now stop and say so, as every other migration does. Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>
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Closes #150. Part 1 of #149.
Adds scripts/migrate.sh and a schema_migrations table, ten migrations for past schema changes that had none, and an API boot check that refuses a database that is behind.
This reaches production. After this merges, the API will not start against an existing database until
scripts/migrate.sh --container <mysql container>has been run there. See mysql/migrations/README.md, "Code and schema move together".Test plan
shell-testsjob green: runner, history upgrade (14 commits converge), expected schematestthat-integrationgreen, with test-schema-migrations.R not skipped🤖 Generated with Claude Code