Issues

• keywords bug

  montilab/SigRepo#285 · Filter by author Cvicnaire opened on Oct 15, 2026

• mergeDifexp() should return signature metadata alongside the matrix

  montilab/SigRepo#282 · Filter by author Cvicnaire opened on Oct 15, 2026

• Add mapMetabolites(): metabolite identifier conversion through the MetaboAnalyst API

  enhancement
  montilab/SigRepo#281 · Filter by author Cvicnaire opened on Oct 15, 2026

• Orthology mapping helper (babelgene) for cross-species compare and search

  enhancement
  montilab/SigRepo#280 · Filter by author Cvicnaire opened on Oct 14, 2026

• pkgdown reference index is missing mergeDifexp() and searchExternal()

  montilab/SigRepo#278 · Filter by author Cvicnaire opened on Oct 14, 2026

• Remove the searchExternal planning documents from docs/ so pkgdown can build

  montilab/SigRepo#275 · Filter by author Cvicnaire opened on Oct 14, 2026

• Bump Version to 1.1.0 for the release

  montilab/SigRepo#272 · Filter by author Cvicnaire opened on Oct 14, 2026

• NEWS for the 1.1.0 release: rename the development header and add the missing bullets

  montilab/SigRepo#270 · Filter by author Cvicnaire opened on Oct 14, 2026
  1

• getSignature() retrieval time: difexp transport and per-signature connections dominate, not OmicSignature$new()

  enhancementneeds-decision
  montilab/SigRepo#261 · Filter by author Cvicnaire opened on Oct 7, 2026
  2

• Cross-omics mapping

  enhancementideaneeds-decision
  Feature

  montilab/SigRepo#257 · Filter by author Cvicnaire opened on Oct 6, 2026

• writeSignatureSearchScript(): take several signatures and write one script for all of them

  enhancementneeds-decision
  montilab/SigRepo#255 · Filter by author Cvicnaire opened on Sep 29, 2026

• searchSignature: filter the numeric columns by range, not equality

  enhancement
  montilab/SigRepo#232 · Filter by author Cvicnaire opened on Sep 22, 2026

• annotate vignette

  documentationready
  Feature

  montilab/SigRepo#225 · Filter by author Cvicnaire opened on Sep 17, 2026
  1

  

• compare_signatures_vignette

  documentationready
  montilab/SigRepo#222 · Filter by author Cvicnaire opened on Sep 17, 2026

• hypeR-GEM

  enhancementready
  Task

  montilab/SigRepo#211 · Filter by author Cvicnaire opened on Sep 14, 2026
  

• AI-supported signature ingestion

  enhancementidea
  Feature

  montilab/SigRepo#179 · Filter by author tetomonti opened on Jun 29, 2026
  1

  

• Reference workflows

  ideaneeds-decision
  montilab/SigRepo#173 · Filter by author tetomonti opened on Jun 9, 2026

• Beyond signature collections

  ideaneeds-decision
  Feature

  montilab/SigRepo#172 · Filter by author tetomonti opened on Jun 4, 2026
  1

  

• Connect to MetaboAnalyst

  ideaneeds-decision
  montilab/SigRepo#171 · Filter by author tetomonti opened on Jun 4, 2026
  3

  

• methylomics Integration

  enhancementneeds-decision
  montilab/SigRepo#169 · Filter by author Cvicnaire opened on Jun 4, 2026

• Connect to GeneAgent

  ideaneeds-decision
  montilab/SigRepo#88 · Filter by author tetomonti opened on Oct 29, 2025

• Connect to signatureSearch

  ideaneeds-decision
  montilab/SigRepo#83 · Filter by author tetomonti opened on Oct 24, 2025
  1