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Add bundled example dataset and generated docs - #7

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pbock1 merged 10 commits into
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codex/add-example-dataset
Jun 1, 2026
Merged

pbock1 merged 10 commits into
mainfrom
codex/add-example-dataset

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@pbock1 pbock1 commented May 30, 2026 •

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Adds the bundled synthetic clockshap_example dataset and updates the package-facing documentation around it.\n\nChanges:\n- Adds data-raw/make_clockshap_example.R and data/clockshap_example.rda.\n- Documents clockshap_example and adds an end-to-end test.\n- Converts README.md to generated README.Rmd and regenerates README.md.\n- Adds the ClockSHAP overview hero figure at man/figures/clockshap-overview.png.\n- Regenerates the README quick-start waterfall at man/figures/README-quick-start-1.png.\n- Replaces vignettes/clockshap-introduction.Rmd with the updated self-contained vignette.\n\nValidation:\n- devtools::build_readme() passes.\n- devtools::check() passes with 0 errors and 0 warnings.\n- One local/environmental NOTE remains: unable to verify current time.

@pbock1 pbock1 changed the title Add bundled synthetic example dataset (clockshap_example) Add bundled example dataset and generated docs May 31, 2026
pbock1 and others added 7 commits May 31, 2026 11:58
Clarified the description of the figure related to lung-tissue data and the pathway-level transcriptomic clock.
Removed redundant information about the synthetic dataset and clarified the explanation of relative age acceleration.
@pbock1
pbock1 merged commit 8d8d35c into main Jun 1, 2026
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pbock1 deleted the codex/add-example-dataset branch June 1, 2026 16:06
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