network-free: start NFsim and RuleMonkey from the model's species amounts (#1373) - #1385

Node.js 20 is deprecated. The following actions target Node.js 20 but are being forced to run on Node.js 24: actions/cache@v4, actions/checkout@v4, actions/upload-artifact@v4, astral-sh/setup-uv@v5, hendrikmuhs/ccache-action@v1.2. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/