[dependabot]

Bumps github/codeql-action/upload-sarif from 4.38.0 to 4.39.0.

Release notes

Sourced from github/codeql-action/upload-sarif's releases.

v4.39.0

• Breaking change: Bump the minimum required CodeQL bundle version to 2.20.7. #4205
• The codeql-action/analyze step now validates that a correct argument for the checkout_path input has been provided. The checkout_path input must be set to the path where the repository that is being analyzed is checked out at on the runner, if that path is something other than the workspace root. If the path does not point to a repository checkout or is different from the path that was used by codeql-action/init, then the CodeQL Action now produces a warning. #4148
• Resolved an issue with third-party caching implementations that prevented caches from being restored correctly. #4206
• The codeql-action/start-proxy step that is used in Code Scanning Default Setup now finds CodeQL releases using the same logic as codeql-action/init. This primarily benefits customers who are using GitHub instances other than github.com where the codeql-action/start-proxy step may previously have been unable to locate recent releases and ended up using outdated versions of the private registry authentication proxy as a result. #4198

v4.38.3

• Upcoming breaking change: CodeQL version 2.21.2 and earlier were discontinued on 24 September 2026 alongside GitHub Enterprise Server 3.17, and will be unsupported by the next minor release of the CodeQL Action. Added a deprecation warning for customers using these versions of CodeQL. #4188
• Update default CodeQL bundle version to 2.27.2. #4203
• Fixed a bug where the decision of whether to use a per-language bundle did not account for custom configurations that reference queries outside of compiled CodeQL packs. This issue was caught during internal testing and did not affect any customer repositories. We will resume the roll out of per-language bundles in the coming weeks. #4184

v4.38.2

• Update default CodeQL bundle version to 2.27.1. #4160

v4.38.1

• The CodeQL Action now has experimental support for CodeQL releases for which per-language bundles are available. Per-language bundles support analysis for a single language and are therefore smaller than the combined bundles that allow analysis for all supported languages. As a result, per-language bundles take up less space on disk and are faster to download. We expect to roll this change out to everyone in the coming weeks. #4146

Changelog

Sourced from github/codeql-action/upload-sarif's changelog.

CodeQL Action Changelog

See the releases page for the relevant changes to the CodeQL CLI and language packs.

[UNRELEASED]

No user facing changes.

4.39.1 - 21 Oct 2026

• Update default CodeQL bundle version to 2.27.3. #4256

4.39.0 - 15 Oct 2026

• Breaking change: Bump the minimum required CodeQL bundle version to 2.20.7. #4205
• The codeql-action/analyze step now validates that a correct argument for the checkout_path input has been provided. The checkout_path input must be set to the path where the repository that is being analyzed is checked out at on the runner, if that path is something other than the workspace root. If the path does not point to a repository checkout or is different from the path that was used by codeql-action/init, then the CodeQL Action now produces a warning. #4148
• Resolved an issue with third-party caching implementations that prevented caches from being restored correctly. #4206
• The codeql-action/start-proxy step that is used in Code Scanning Default Setup now finds CodeQL releases using the same logic as codeql-action/init. This primarily benefits customers who are using GitHub instances other than github.com where the codeql-action/start-proxy step may previously have been unable to locate recent releases and ended up using outdated versions of the private registry authentication proxy as a result. #4198

4.38.3 - 08 Oct 2026

• Upcoming breaking change: CodeQL version 2.21.2 and earlier were discontinued on 24 September 2026 alongside GitHub Enterprise Server 3.17, and will be unsupported by the next minor release of the CodeQL Action. Added a deprecation warning for customers using these versions of CodeQL. #4188
• Update default CodeQL bundle version to 2.27.2. #4203
• Fixed a bug where the decision of whether to use a per-language bundle did not account for custom configurations that reference queries outside of compiled CodeQL packs. This issue was caught during internal testing and did not affect any customer repositories. We will resume the roll out of per-language bundles in the coming weeks. #4184

4.38.2 - 24 Sept 2026

• Update default CodeQL bundle version to 2.27.1. #4160

4.38.1 - 18 Sept 2026

• The CodeQL Action now has experimental support for CodeQL releases for which per-language bundles are available. Per-language bundles support analysis for a single language and are therefore smaller than the combined bundles that allow analysis for all supported languages. As a result, per-language bundles take up less space on disk and are faster to download. We expect to roll this change out to everyone in the coming weeks. #4146

4.38.0 - 09 Sept 2026

• On GitHub-hosted runners, the CodeQL Action now deletes unused CodeQL bundles from the toolcache before downloading a different bundle, which frees up disk space for the analysis. We expect to roll this change out to everyone in September. #4124
• The CodeQL Action now supports CodeQL releases that are compatible with Linux Arm64 and downloads the native linux-arm64 CodeQL bundle when available. #4072
• Update default CodeQL bundle version to 2.27.0. #4129

4.37.9 - 26 Aug 2026

• Update default CodeQL bundle version to 2.26.4. #4106

4.37.8 - 21 Aug 2026

No user facing changes.

4.37.7 - 13 Aug 2026

• Update default CodeQL bundle version to 2.26.3. #4085

... (truncated)

Commits

• 6f2ac81 Merge pull request #4239 from github/update-v4.39.0-d63383a73
• eb1c428 Trigger workflows
• 4443333 Update changelog for v4.39.0
• d63383a Merge pull request #4233 from github/mbg/start-proxy/report-version
• 8dec0b9 Rename path to result in tests
• 4eabea6 Merge remote-tracking branch 'origin/main' into mbg/start-proxy/report-version
• 57938b8 Merge pull request #4201 from github/mario-campos/automate-changenotes-assemble
• ee07b50 Merge pull request #4236 from github/mbg/add-missing-changenotes
• a897ed5 Add change note for #4206
• c8bd019 Add change note for #4198
• Additional commits viewable in compare view

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[github-actions]

Fork governance

Lane	Status	Run
DEED syntax (repo deed)	🟢 conformant	run 39999478651
K9 conformance (L0–L2; L3 not verified)	green (job: success)	same run
Hypatia verdict grid	purple (job: success)	same run

🟣 critical · commit 97e5752dc70c · run 39999478651

Reporter	Status	Critical	High	Medium	Minor	Since previous revision
Hypatia scan	🟣 critical	45	57	26	0	↔ unchanged
panic-attack assail	🔴 high	0	6	2	0	↑ fewer medium
pons asinorum	🟢 clean	0	0	0	0	↑ fewer medium
rhodibot (RSR compliance)	🟠 indeterminate	0	0	0	0	— indeterminate
panicbot (panic recovery, error handling)	🟠 indeterminate	0	0	0	0	— indeterminate
echidnabot (formal verification: proofs/)	🟠 indeterminate	0	0	0	0	— indeterminate
seambot (integration health: API routes)	🟠 indeterminate	0	0	0	0	— indeterminate
finishingbot (release readiness)	🟠 indeterminate	0	0	0	0	— indeterminate
accessibilitybot (WCAG on the React UI)	🟠 indeterminate	0	0	0	0	— indeterminate
glambot (presentation quality)	🟠 indeterminate	0	0	0	0	— indeterminate
cipherbot	⚪ not applicable	0	0	0	0	↔ unchanged
sustainabot	⚪ not applicable	0	0	0	0	↔ unchanged

Hypatia scan: 128 finding(s)

• critical cicd_rules/banned_language_file — frontend/src/views/run/parseFilterYaml.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/figure/encode.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/figure/charts.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/figure/export.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/figure/figure.test.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/figure/legend.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/figure/types.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/utils/download.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/utils/text.test.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/utils/timeago.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/utils/text.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/hooks/useUnsavedGuard.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/hooks/useApi.test.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/hooks/useApi.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/hooks/useAnalysis.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/hooks/useSSE.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/hooks/useTabParam.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/hooks/useNavRefresh.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/hooks/useJobEvents.ts — TypeScript file detected -- banned language
• critical cicd_rules/banned_language_file — frontend/src/about.ts — TypeScript file detected -- banned language
• 108 more; see the structured report in the artifact.

panic-attack assail: 8 finding(s)

• high DynamicCodeExecution — src/pipeline/dada2/context.jl — eval/Meta.parse in src/pipeline/dada2/context.jl
• high DynamicCodeExecution — src/analysis/analysis.jl — eval/Meta.parse in src/analysis/analysis.jl
• high DynamicCodeExecution — src/analysis/differential.jl — eval/Meta.parse in src/analysis/differential.jl
• high DynamicCodeExecution — src/core/provenance.jl — eval/Meta.parse in src/core/provenance.jl
• high DynamicCodeExecution — scripts/check-julia-syntax.jl — eval/Meta.parse in scripts/check-julia-syntax.jl
• high DynamicCodeExecution — test/unit/test_permanova.jl — eval/Meta.parse in test/unit/test_permanova.jl
• medium UnsafeFFI — src/core/memory_probe.jl — 3 ccall/FFI calls in src/core/memory_probe.jl
• medium UnsafeFFI — install.jl — 1 ccall/FFI calls in install.jl

rhodibot (RSR compliance): not_run — enrolled, but no report-back was received

• 🟠 indeterminate: enrolled, but no report-back was received

panicbot (panic recovery, error handling): not_run — enrolled, but no report-back was received

• 🟠 indeterminate: enrolled, but no report-back was received

echidnabot (formal verification: proofs/): not_run — enrolled, but no report-back was received

• 🟠 indeterminate: enrolled, but no report-back was received

seambot (integration health: API routes): not_run — enrolled, but no report-back was received

• 🟠 indeterminate: enrolled, but no report-back was received

finishingbot (release readiness): not_run — enrolled, but no report-back was received

• 🟠 indeterminate: enrolled, but no report-back was received

accessibilitybot (WCAG on the React UI): not_run — enrolled, but no report-back was received

• 🟠 indeterminate: enrolled, but no report-back was received

glambot (presentation quality): not_run — enrolled, but no report-back was received

• 🟠 indeterminate: enrolled, but no report-back was received

cipherbot: not_applicable — no cryptography is implemented in this repository

• ⚪ not applicable: no cryptography is implemented in this repository

sustainabot: not_applicable — fleet adapter slot reserved; no adapter exists yet (gitbot-fleet README)

• ⚪ not applicable: fleet adapter slot reserved; no adapter exists yet (gitbot-fleet README)

Scope: static findings reported by each row's tool at the named commit. Purple, red, yellow and blue grade the worst finding present; orange is evidence missing, malformed or a scanner that did not run; grey is an explicit scope exclusion with its reason. No row is a security certification. report.json, badge.json and the raw findings are in the verdict-grid artifact on the linked run.

🟢 conformant · commit 97e5752dc70c · run 39999478651 · validator hyperpolymath/standards@c6d78606f392

Category	Status	Pass	Fail	Indeterminate	N/A	Since previous revision
K9 contract typecheck	🟢 conformant	1	0	0	0	— no comparable baseline
K9 validator self-test	🟢 conformant	37	0	0	0	— no comparable baseline
K9 live corpus (L0–L2)	🟢 conformant	3	0	0	0	— no comparable baseline

Scope: K9 components L0–L2 against contract v1.0.0 at the named standards commit. L3 signature verification and routed coordination-dialect files are not certified. Green is limited to this scope. Orange is missing evidence; yellow is grandfathered debt or warnings; grey is an explicit scope exclusion. report.json, badge.json and the validator logs are in the k9-grid artifact on the linked run.

[sonarqubecloud]

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud