Issues

• nb_glm's default glm_nb Wald test is anti-conservative at small n: replicate before raising upstream

  analysisscientific-riskscope:repo
  hyperpolymath/MetaManifold-WebUI#193 · Filter by author hyperpolymath opened on Oct 20, 2026

• feat(analysis): Advanced zero handling — glmGamPoi dispersion, Bayesian multiplicative replacement, multiplicative replacement with delta

  analysisdifficulty:mediumenhancementpriority:p3scientific-value:mediumscope:repostatus:blockedzero-handling
  hyperpolymath/MetaManifold-WebUI#21 · Filter by author hyperpolymath opened on Sep 18, 2026
  1

• feat(analysis): Constrained ordinations — RDA, CCA, CAP, dbRDA, with permutation tests and variance partitioning

  analysisbeta-diversitydifficulty:hardenhancementordinationpriority:p2scientific-value:highscope:repo
  hyperpolymath/MetaManifold-WebUI#19 · Filter by author hyperpolymath opened on Sep 18, 2026
  1

• feat(analysis): Occupancy models — presence/absence with imperfect detection, zero-inflated NB, hurdle models

  analysisdifficulty:hardenhancementpriority:p2scientific-value:highscope:repozero-inflation
  hyperpolymath/MetaManifold-WebUI#18 · Filter by author hyperpolymath opened on Sep 18, 2026
  1

• feat(analysis): Multinomial and Dirichlet-Multinomial models — Songbird-like multinomial regression, DM for overdispersed compositions

  analysiscompositionaldifficulty:hardenhancementpriority:p3scientific-value:highscope:repo
  hyperpolymath/MetaManifold-WebUI#17 · Filter by author hyperpolymath opened on Sep 18, 2026
  1

• feat(doi): Zenodo integration — automated DOI minting

  enhancementpriority:p3scope:repo
  hyperpolymath/MetaManifold-WebUI#8 · Filter by author hyperpolymath opened on Sep 18, 2026
  1

• feat(cladistics): CladeCumulus phylogenetic integration

  enhancementpriority:p3scope:repo
  hyperpolymath/MetaManifold-WebUI#6 · Filter by author hyperpolymath opened on Sep 18, 2026
  1

• feat(ui): Full Evidence Mode — epistemic editor, fiber visualizer

  enhancementpriority:p3scope:repostatus:blocked
  hyperpolymath/MetaManifold-WebUI#7 · Filter by author hyperpolymath opened on Sep 18, 2026
  1

• feat(analysis): Advanced compositional methods — ANCOM-BC, ALDEx2, Songbird

  enhancementpriority:p3scope:repo
  hyperpolymath/MetaManifold-WebUI#5 · Filter by author hyperpolymath opened on Sep 18, 2026
  1

• feat(analysis): Exact statistics layer — Fisher's exact, exact NB, permutation tests

  enhancementpriority:p3scope:repostatus:blocked
  hyperpolymath/MetaManifold-WebUI#3 · Filter by author hyperpolymath opened on Sep 18, 2026
  1

• feat(analysis): Symbolic engine for formula manipulation

  enhancementpriority:p3scientific-riskscope:repostatus:blocked
  hyperpolymath/MetaManifold-WebUI#4 · Filter by author hyperpolymath opened on Sep 18, 2026
  2

• BLOCKED: assess a symbolic mathematics engine only after deep statistical validation

  decisionpriority:p3scope:repostatus:blocked
  hyperpolymath/MetaManifold-WebUI#2 · Filter by author hyperpolymath opened on Sep 18, 2026

• Add a validated Julia statistics layer with exact counts/rationals and higher precision

  enhancementpriority:p1scope:repostatus:ready
  hyperpolymath/MetaManifold-WebUI#1 · Filter by author hyperpolymath opened on Sep 18, 2026
  6