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fix(cladistics): carry #230 onto current main and answer its review findings - #235

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hyperpolymath wants to merge 15 commits into

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arena/005d23e6-metamanifold-webui

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fix(cladistics): carry #230 onto current main and answer its review findings#235
hyperpolymath wants to merge 15 commits into
mainfrom
arena/005d23e6-metamanifold-webui

Commits on Oct 23, 2026
- fix(cladistics): load the DOI module, drop a duplicate route include, and repair the CladeCumulus readers
  
  Arena Agent
  and
  arena-agent
  committed
  6f7d5f5
- Merge #223 into main and preserve unplaced placement mass
  hyperpolymath
  committed
  6fadc26
- fix(cladistics): normalise treeFile at the request boundary
  hyperpolymath
  committed
  d9a444c
- fix(cladistics): divide weighted UniFrac by the library size, not the placed mass
  hyperpolymath
  committed
  f5830a1
- fix(stats): implement the missing erfc, and repair two never-run tests
  hyperpolymath
  committed
  7a6ead9
- Merge main (#226/#217) and keep the unplaced-mass fix
  hyperpolymath
  committed
  700fc86
- Merge #230 into current main and answer its review findings
  
  hyperpolymath
  and
  arena-agent
  committed
  d3f4378
- fix(cladistics): clear a vacated clade's residual along with its count
  
  hyperpolymath
  and
  arena-agent
  committed
  58848d9
- ci: re-fire the PR checks for 58848d9
  
  hyperpolymath
  and
  arena-agent
  committed
  2af8c12
- Update test/unit/test_clade_cumulus.jl
  
  hyperpolymath
  and
  coderabbitai[bot]
  authored
  869ea15
- Merge main (#234/#236/#237) into the #230 follow-up
  
  hyperpolymath
  and
  arena-agent
  committed
  41ddb13
- Merge the branch's own CodeRabbit suggestion commit (869ea15)
  hyperpolymath
  committed
  668a6bf
- Document CladeCumulus parsing, UniFrac calculations, move reaggregation, and explorer behavior
  coderabbitai[bot]
  committed
  0d9656b
- fix(cladistics): exclude vacated clades from tip counts while preserving zero-read terminals
  coderabbitai[bot]
  committed
  2b9e388
- Merge main: #239 already carries every fix from this branch
  
  hyperpolymath
  and
  arena-agent
  committed
  92a205f

Commits

Commits on Oct 23, 2026