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ci: run the fork's suite on the rebased #33 branch (origin hardening + split-deployment docs) - #114

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hyperpolymath wants to merge 28 commits into

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arena/0a94d883-metamanifold-webui

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ci: run the fork's suite on the rebased #33 branch (origin hardening + split-deployment docs)#114
hyperpolymath wants to merge 28 commits into
mainfrom
arena/0a94d883-metamanifold-webui

Commits on Oct 7, 2026
- Add a CLR linear-model method for differential abundance
  
  authored and
  JoshuaJewell
  committed
  b21d005
- clr_lm: filter by prevalence before cmultRepl, and test with Welch
  
  authored and
  JoshuaJewell
  committed
  3acf607
- Rename the clr_lm method to clr_welch
  
  authored and
  JoshuaJewell
  committed
  c548451
- Test clr_welch when zCompositions is missing
  
  authored and
  JoshuaJewell
  committed
  657120c
- Run the zCompositions-absent test in CI instead of skipping it
  
  authored and
  JoshuaJewell
  committed
  b86d59f
- Test the cmultRepl output check directly
  
  authored and
  JoshuaJewell
  committed
  7799de8
- proofs(agda): Benjamini-Hochberg adjustment over exact rationals
  
  authored and
  JoshuaJewell
  committed
  3f9a5bc
- proofs(agda): TSS proportions and RLE median positivity over exact rationals
  
  authored and
  JoshuaJewell
  committed
  1d8572f
- proofs: axiom audit for the Agda tree; align headers with D1's Julia
  
  authored and
  JoshuaJewell
  committed
  b3e871d
- proofs: ignore Agda interface files
  
  authored and
  JoshuaJewell
  committed
  a3ccd2e
- ci: type-check the Agda proofs; docs: map each theorem to its Julia code
  
  authored and
  JoshuaJewell
  committed
  6df0e56
- docs: keep the theorem-to-code map with the proofs
  
  authored and
  JoshuaJewell
  committed
  aacf5d1
- fix(differential): refuse complete separation instead of reporting p≈1
  
  authored and
  JoshuaJewell
  committed
  af75c8c
- fix: separate a significance test that did not run from a null result
  
  authored and
  JoshuaJewell
  committed
  c860980
- Test that an omnibus statistic R cannot compute is a failed test
  
  authored and
  JoshuaJewell
  committed
  f71fa03
Commits on Oct 9, 2026
- fix(server): log an unreadable config at warn, not error
  
  authored and
  JoshuaJewell
  committed
  c4b2efc
- Test that an unreadable primers.yml is logged as a warning
  
  authored and
  JoshuaJewell
  committed
  144d0c1
Commits on Oct 14, 2026
- fix(ci): give the required status check a version-stable name
  
  authored and
  JoshuaJewell
  committed
  d0b31f4
- fix(ci): drop the 1x1 matrix so the check name is actually stable
  
  authored and
  JoshuaJewell
  committed
  5b45d09
- docs(ci): name the fork PR that measured the matrix-suffixed check name
  
  authored and
  JoshuaJewell
  committed
  f9cf729
- docs: the Julia pin is repeated in the CI workflow, which has no matrix
  
  authored and
  JoshuaJewell
  committed
  9d888f1
- Gate file-name config values and remote keys; guard pipeline tables on delete
  
  authored and
  JoshuaJewell
  committed
  a37a642
- Test that a remote host without a staging_dir is refused
  
  authored and
  JoshuaJewell
  committed
  578915c
- fix(permanova): test each term, report permutations, refuse untestable terms (#35)
  
  authored
  592ddd7
- Clear stale analysis results and surface request failures in the UI
  
  authored and
  JoshuaJewell
  committed
  bcf52af
- Harden server origin checks, disable Oxygen docs, serve uploads inert
  
  hyperpolymath
  and
  claude
  committed
  eea7660
- Accept the SPA index for /docs paths when a frontend build is present
  
  hyperpolymath
  and
  claude
  committed
  bec9c75
- docs: describe split deployments and the origins the server must be told about
  
  hyperpolymath
  and
  claude
  committed
  b29ff57

Commits

Commits on Oct 7, 2026

Commits on Oct 9, 2026

Commits on Oct 14, 2026