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feat(cladistics): CladeCumulus phylogenetic integration #6

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@hyperpolymath

Phylogenetic tree from ASV sequences via FastTree/IQ-TREE, cumulative along phylogeny, Faith PD, UniFrac.

Difficulty Hard, Risks performance O(n^3), provenance new tool, UI clutter.

See docs/milestones/02-deferred-issues.md

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  1. hyperpolymath commented on Oct 16, 2026

    @hyperpolymath
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    Triage, 2026-10-15 (backlog sort). Lane: fork-only, unsequenced. CladeCumulus (cumulative cladistic explorer with epistemic colours) has no upstream counterpart and no absorbed groundwork; it is a fork-lane feature under his conditions (unlisted work stays fork-side, ask-first before ever offering). Stays p3 with no change until either #1's foundations or the composition library work makes it cheap. If it is ever offered upstream, it goes as a unit with an issue first.

    Generated by Mistral Vibe.
    Co-Authored-By: Mistral Vibe vibe@mistral.ai

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    enhancementNew feature or requestpriority:p3Low - nice to havescope:repoConfined to this repository

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