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Merged
alejandrogzi merged 1 commit into from
Sep 30, 2026
Merged

feat(oriongeno): add scatter workflow #36

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2 changes: 2 additions & 0 deletions assets/catalog/catalog.md
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Expand Up @@ -122,6 +122,8 @@
- [workflows/tiberius](../../workflows/tiberius/main.nf) — Standalone Tiberius pipeline.
- [oriongeno/predict](../../modules/nextflow/oriongeno/predict/main.nf) — OrionGeno ab initio gene annotation on one GPU (`process_gpu`). No CPU fallback. Default checkpoint: mammals. GTF by default, GFF3 via `meta.oriongeno_format`. Bundled OrionGeno is non-commercial.
- [oriongeno/multi](../../modules/nextflow/oriongeno/multi/main.nf) — OrionGeno annotation across the GPUs assigned to the task (`oriongeno multi`). Writes GTF. `process_gpu` requests one GPU; raise `accelerator` on `ORIONGENO_MULTI` to use more.
- [subworkflows/oriongeno](../../subworkflows/oriongeno/main.nf) — Scatter (none / chromosome / weighted), predict on one GPU per piece, and gather. Renumbers gene ids in FASTA order.
- [workflows/oriongeno](../../workflows/oriongeno/main.nf) — Standalone OrionGeno pipeline. Bundled OrionGeno is non-commercial.

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