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  1. TOGA TOGA Public

    TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…

    Python 212 26

  2. make_lastz_chains make_lastz_chains Public

    Portable solution to generate genome alignment chains using lastz

    Nextflow 74 16

  3. GenomeAlignmentTools GenomeAlignmentTools Public

    Tools for improving the sensitivity and specificity of genome alignments

    C 58 16

  4. TOGA2 TOGA2 Public

    TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments

    Python 58 6

  5. CESAR2.0 CESAR2.0 Public

    C 29 14

  6. GeneLossPipe GeneLossPipe Public

    Perl 25 7

Repositories

Showing 10 of 24 repositories
  • xorf Public

    comprehensive prediction of open-reading-frames

    hillerlab/xorf's past year of commit activity
    Rust 0 GPL-3.0 0 0 1 Updated Oct 22, 2026
  • containers Public

    A compendium of The Hiller Lab containers/Dockerfiles

    hillerlab/containers's past year of commit activity
    Rust 3 Apache-2.0 1 0 0 Updated Oct 20, 2026
  • core Public

    The core collection of The Hiller Lab nextflow/wdl modules

    hillerlab/core's past year of commit activity
    Nextflow 3 Apache-2.0 1 0 0 Updated Oct 15, 2026
  • longread Public

    Simulate PacBio Iso-Seq reads at scale

    hillerlab/longread's past year of commit activity
    Rust 0 Apache-2.0 0 0 0 Updated Oct 9, 2026
  • ALE Public

    Hosting for Aggregate Lifespan Encyclopedia

    hillerlab/ALE's past year of commit activity
    JavaScript 0 0 0 0 Updated Oct 8, 2026
  • xasm Public

    meta-assemble bulk RNAseq datasets at scale

    hillerlab/xasm's past year of commit activity
    Nextflow 0 GPL-3.0 0 0 0 Updated Oct 7, 2026
  • toga2kbpython Public

    Gene expression quantification pipeline based on kb-python compatible with TOGA2 output structure

    hillerlab/toga2kbpython's past year of commit activity
    Python 0 0 0 0 Updated Oct 7, 2026
  • hspZ Public

    GPU-accelerated high-scoring ungapped alignment pair backend

    hillerlab/hspZ's past year of commit activity
    Rust 0 GPL-3.0 0 0 0 Updated Sep 29, 2026
  • TOGA2 Public

    TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments

    hillerlab/TOGA2's past year of commit activity
    Python 58 MIT 6 7 2 Updated Sep 10, 2026
  • bqc Public

    CBQ-native all-in-one quality control tool

    hillerlab/bqc's past year of commit activity
    Rust 0 GPL-3.0 0 0 0 Updated Sep 10, 2026
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