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v0.0.4: persistent Salmon index via sniff index - #8
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Persistent Salmon 2.x transcriptome index from a FASTA (plain or gzipped), written beside the FASTA as <stem>.index or to --output-directory/--prefix. Same sniff-strand feature as sniff strand.
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What
The v0.0.4 feature release (version bumped in
Cargo.toml):bqc sniff index— persistent Salmon 2.x transcriptome index for reuse withbqc sniff strand --index:--sequencetakes a transcriptome FASTA, plain or gzipped<stem>.indexbeside the FASTA--output-directoryand--prefixoverride location and name--forcereplaces an existing directory; without it the dest is refused before the buildsniff-strandfeature assniff strand--transcriptomeonsniff strandremains the throwaway one-shotVerification
cargo test --features sniff-strand --test strand: 13 passed (including 5sniff_index_*cases).cargo test --lib: 244 passed.cargo clippy --features sniff-strand --all-targets -- -D warnings: clean.