Various tools for evaluating PacBio HiFi reads, quality checking of contigs generated by different assemblers and so on.
Snakemake should be installed together with Anaconda/Miniconda3.
Generally, all required conda environments are implemented in each pipeline and are installed during deploying the pipeline.
The directory structure is fixed and parts of it should be defined a priori(details in each pipeline can be found).
Move to the working directory (i.e. where the Snakefile is located) and run the following command:
snakemake --cores [user-defined] --use-conda all