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qq.plink: QQ plot from PLINK assoc format

Usage:

Rscript qq.plink.R plink.assoc "some title"

Requires that column with P values is labeled as P.

Example data:

> write.table(data.frame(P=runif(2000000,0,1)), gzfile("p.gz", "w"), row.names=FALSE, quote=FALSE)

Example command:

Rscript qq.plink.R p.gz "Example QQ Plot"

Example plot:

Example QQ plot

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QQ plot from PLINK assoc format

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