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@usadellab

usadellab

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  1. Trimmomatic Trimmomatic Public

    Java 322 85

  2. Helixer Helixer Public

    Using Deep Learning to predict gene annotations

    Python 314 37

  3. gfftk gfftk Public

    GFF toolkit to work with GFF files

    C++ 4

  4. HelixerPost HelixerPost Public

    Rust 10 8

Repositories

Showing 10 of 33 repositories
  • pubplant2schemaorg Public

    This repository automates the transformation of genomic metadata from PubPlant into Schema.org/Dataset JSON-LD.

    usadellab/pubplant2schemaorg's past year of commit activity
    Python 0 0 0 0 Updated Oct 28, 2026
  • Helixer Public

    Using Deep Learning to predict gene annotations

    usadellab/Helixer's past year of commit activity
    Python 314 GPL-3.0 37 27 7 Updated Oct 27, 2026
  • HelixerPost Public
    usadellab/HelixerPost's past year of commit activity
    Rust 10 GPL-3.0 8 9 4 Updated Oct 27, 2026
  • dmp-eva Public

    An AI-assisted front-end DMP evaluation tool

    usadellab/dmp-eva's past year of commit activity
    JavaScript 6 MIT 1 0 0 Updated Oct 21, 2026
  • protocol-eva Public

    AI assisted protocol evaluation benchmarking

    usadellab/protocol-eva's past year of commit activity
    Python 1 0 0 0 Updated Oct 9, 2026
  • ChloroFORGE Public

    Reassemble chloroplast genomes from precomputed assemblies

    usadellab/ChloroFORGE's past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Sep 28, 2026
  • Trimmomatic Public
    usadellab/Trimmomatic's past year of commit activity
    Java 322 85 5 1 Updated Sep 28, 2026
  • hifiasm Public Forked from chhylp123/hifiasm

    fork of Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

    usadellab/hifiasm's past year of commit activity
    C++ 0 MIT 134 0 0 Updated Aug 14, 2026
  • ScorpionSubmission Public

    Using APIs to get KPIs from Matomo and Google Scholar and submit them to Scorpion (de.NBI)

    usadellab/ScorpionSubmission's past year of commit activity
    Python 3 MIT 0 0 0 Updated Aug 3, 2026
  • helixer-docker Public
    usadellab/helixer-docker's past year of commit activity
    Dockerfile 12 MIT 4 5 1 Updated Jul 1, 2026
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