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[codex] fix dependency audit issues#2028

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codex/fix-dependency-audit-issues
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[codex] fix dependency audit issues#2028
elibosley wants to merge 1 commit into
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codex/fix-dependency-audit-issues

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@elibosley

@elibosley elibosley commented Jun 14, 2026

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Summary

  • Upgrade vulnerable dependency ranges across the workspace and refresh pnpm-lock.yaml.
  • Add a repo audit wrapper that filters ignored CVEs and pnpm's stale actions for ignored advisories/workspace importer false positives.
  • Keep existing dependencies in place rather than removing them, including ip and lodash-es.
  • Fix the Unraid plugins missing-directory test so it uses an isolated temp path.

Validation

  • pnpm run --silent audit --prod
  • pnpm --filter ./api type-check
  • pnpm --filter ./api test

Notes

  • The unpatched ip advisory is ignored through repo audit policy because npm reports no patched version.
  • Native pnpm audit --prod still leaves a stale action for that ignored advisory; use the repo audit script for CI/user checks.

Summary by CodeRabbit

  • Chores

    • Updated all project dependencies to latest stable versions, including framework packages, testing libraries, and tooling.
    • Added security audit configuration with vulnerability reporting.
  • Tests

    • Improved test isolation and cleanup to prevent filesystem side effects.

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ℹ️ Review info
⚙️ Run configuration

Configuration used: Repository UI

Review profile: CHILL

Plan: Pro

Run ID: d49d549e-82e0-49dd-9c8c-4573047cc8cf

📥 Commits

Reviewing files that changed from the base of the PR and between 58b6f3b and 0baec05.

⛔ Files ignored due to path filters (2)
  • pnpm-lock.yaml is excluded by !**/pnpm-lock.yaml
  • web/__test__/helpers/__snapshots__/markdown.test.ts.snap is excluded by !**/*.snap
📒 Files selected for processing (31)
  • api/package.json
  • api/src/unraid-api/graph/resolvers/unraid-plugins/unraid-plugins.service.spec.ts
  • package.json
  • packages/unraid-api-plugin-connect/package.json
  • packages/unraid-api-plugin-generator/package.json
  • packages/unraid-api-plugin-health/package.json
  • packages/unraid-shared/package.json
  • plugin/package.json
  • scripts/pnpm-audit.mjs
  • unraid-ui/package.json
  • unraid-ui/src/components/common/accordion/Accordion.vue
  • unraid-ui/vite.config.ts
  • web/__test__/components/Logs/SingleLogViewer.test.ts
  • web/__test__/components/SsoButton.test.ts
  • web/__test__/helpers/markdown.test.ts
  • web/__test__/setup.ts
  • web/__test__/store/callbackActions.test.ts
  • web/auto-imports.d.ts
  • web/components.d.ts
  • web/package.json
  • web/src/components/Common/ResizableSlideover.vue
  • web/src/components/Docker/DockerContainerManagement.vue
  • web/src/components/Onboarding/components/InternalBootConfirmDialog.vue
  • web/src/composables/gql/graphql.ts
  • web/src/composables/useContentHighlighting.ts
  • web/src/composables/useContextMenu.ts
  • web/src/composables/useDockerRowActions.ts
  • web/src/helpers/markdown.ts
  • web/src/store/callbackActions.ts
  • web/vitest.config.ts
  • web/vitest.setup.ts

Walkthrough

Dependency versions are bumped across all monorepo workspaces (api, plugin packages, unraid-ui, web, plugin). A new scripts/pnpm-audit.mjs Node.js script is introduced to post-process pnpm audit output with CVE/GHSA ignore rules and workspace-importer filtering. A test is updated to use isolated temporary directories.

Changes

Monorepo dependency upgrades and test fix

Layer / File(s) Summary
api/package.json: Apollo Server, NestJS, and runtime deps
api/package.json
Upgrades @apollo/server 4.x → 5.5.1, NestJS packages to 11.1.26/13.4.2, and a broad set of runtime and dev deps including casbin, class-validator, fastify, diff, glob, pm2, undici, uuid, ws, vite, vitest, and zx.
Shared package dependency alignment
packages/unraid-api-plugin-connect/package.json, packages/unraid-api-plugin-generator/package.json, packages/unraid-api-plugin-health/package.json, packages/unraid-shared/package.json
Aligns NestJS (@nestjs/apollo, @nestjs/common, @nestjs/core, @nestjs/graphql) and peer/dev versions (class-validator, lodash-es, undici, vitest, ws) in all shared workspace packages to match the api versions.
Frontend workspace dependency bumps
unraid-ui/package.json, web/package.json, plugin/package.json
Bumps dompurify, shadcn-vue, vue-sonner, ajv, happy-dom, postcss, storybook, vite, vitest, wrangler in unraid-ui; promotes @nuxt/ui from alpha to stable 4.8.2 plus glob, lodash-es, ajv in web; bumps glob, vitest, zx in plugin.
Test: isolated temp dir for missing-plugin-directory case
api/src/unraid-api/graph/resolvers/unraid-plugins/unraid-plugins.service.spec.ts
Replaces the hardcoded /tmp path with a mkdtemp-created unique temp directory cleaned up in a finally block.

pnpm audit tooling

Layer / File(s) Summary
Root package.json: audit script wiring and CVE ignore config
package.json
Adds scripts.audit pointing to pnpm-audit.mjs, expands pnpm.overrides including @graphql-tools/utils, sets auditConfig.ignoreCves for CVE-2024-29415, and bumps root diff to 8.0.4.
pnpm-audit.mjs: audit post-processor
scripts/pnpm-audit.mjs
New script that runs pnpm audit --json, strips workspace-importer actions, applies ignoreCves/ignoreGhsas rules from pnpm.auditConfig, recomputes vulnerability metadata counts by severity, and exits 0 only when no advisories remain.

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~20 minutes

Poem

🐇 Hop hop, the versions all rise,
From alpha to stable, what a surprise!
Apollo leaps five, NestJS climbs high,
And a script now watches each CVE fly.
Temp dirs cleaned up with a tidy finally,
The warren is patched — quite securely! 🌿

🚥 Pre-merge checks | ✅ 4 | ❌ 1

❌ Failed checks (1 warning)

Check name Status Explanation Resolution
Docstring Coverage ⚠️ Warning Docstring coverage is 0.00% which is insufficient. The required threshold is 80.00%. Write docstrings for the functions missing them to satisfy the coverage threshold.
✅ Passed checks (4 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The PR title '[codex] fix dependency audit issues' directly aligns with the main objective of addressing dependency audit vulnerabilities and implementing filtering logic for ignored CVEs.
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.

✏️ Tip: You can configure your own custom pre-merge checks in the settings.

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🚀 Storybook has been deployed to staging: https://unraid-ui-storybook-staging.unraid-workers.workers.dev

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Actionable comments posted: 3

🤖 Prompt for all review comments with AI agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

Inline comments:
In
`@api/src/unraid-api/graph/resolvers/unraid-plugins/unraid-plugins.service.spec.ts`:
- Around line 170-175: Replace the mock ConfigService object creation that uses
the `as unknown as ConfigService` casting pattern with the `vi.spyOn()` approach
to maintain type safety and avoid unsafe casting. The current pattern at the
configService initialization violates type safety guidelines. Instead of
creating a mock object and casting it, use the spy approach demonstrated in the
existing test setup to properly mock the ConfigService without bypassing
TypeScript's type checking. Apply this fix consistently wherever this pattern
appears in the test file.

In `@scripts/pnpm-audit.mjs`:
- Around line 9-13: The spawnSync call for the pnpm audit command in the audit
function does not specify an explicit maxBuffer option, which defaults to 1 MB
and can be exceeded by large audit payloads, causing stdout truncation and
JSON.parse failures. Add a maxBuffer property to the options object passed to
spawnSync with a significantly larger value (such as 10 MB or higher) to
accommodate large audit output without truncation.

In `@unraid-ui/package.json`:
- Line 89: The devDependencies for ajv has been upgraded to 8.20.0, but the
peerDependencies.ajv is still pinned to 8.17.1, creating a version mismatch.
Update the peerDependencies.ajv version from 8.17.1 to 8.20.0 to align with the
upgraded devDependencies version and match what is being consumed in
web/package.json.
🪄 Autofix (Beta)

Fix all unresolved CodeRabbit comments on this PR:

  • Push a commit to this branch (recommended)
  • Create a new PR with the fixes

ℹ️ Review info
⚙️ Run configuration

Configuration used: Repository UI

Review profile: CHILL

Plan: Pro

Run ID: 869d8a80-ee9e-4352-9190-bb46f85b2e2b

📥 Commits

Reviewing files that changed from the base of the PR and between 6f94aa1 and 58b6f3b.

⛔ Files ignored due to path filters (1)
  • pnpm-lock.yaml is excluded by !**/pnpm-lock.yaml
📒 Files selected for processing (11)
  • api/package.json
  • api/src/unraid-api/graph/resolvers/unraid-plugins/unraid-plugins.service.spec.ts
  • package.json
  • packages/unraid-api-plugin-connect/package.json
  • packages/unraid-api-plugin-generator/package.json
  • packages/unraid-api-plugin-health/package.json
  • packages/unraid-shared/package.json
  • plugin/package.json
  • scripts/pnpm-audit.mjs
  • unraid-ui/package.json
  • web/package.json

Comment on lines +170 to +175
const configService = {
get: vi.fn().mockReturnValue({
'dynamix-base': join(tempDir, 'missing', 'dynamix-base'),
}),
} as unknown as ConfigService;
const configuredService = new UnraidPluginsService(configService);

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🛠️ Refactor suggestion | 🟠 Major

🧩 Analysis chain

🏁 Script executed:

#!/bin/bash
rg -nP "as\\s+unknown\\s+as\\s+ConfigService|\\bas\\s+any\\b" api/src/unraid-api/graph/resolvers/unraid-plugins/unraid-plugins.service.spec.ts

Repository: unraid/api

Length of output: 286


🏁 Script executed:

# Get the full context around lines 170-175 and examine surrounding test structure
sed -n '150,180p' api/src/unraid-api/graph/resolvers/unraid-plugins/unraid-plugins.service.spec.ts | cat -n

Repository: unraid/api

Length of output: 1650


🏁 Script executed:

# Check the imports and ConfigService definition in this test file
head -40 api/src/unraid-api/graph/resolvers/unraid-plugins/unraid-plugins.service.spec.ts | cat -n

Repository: unraid/api

Length of output: 1690


🏁 Script executed:

# Verify all instances of casting pattern and understand test structure
grep -n -B2 -A2 "as unknown as" api/src/unraid-api/graph/resolvers/unraid-plugins/unraid-plugins.service.spec.ts

Repository: unraid/api

Length of output: 1024


🏁 Script executed:

# Check ConfigService definition and whether it can be instantiated directly
fd -t f ConfigService.ts$ | head -5 | xargs cat -n 2>/dev/null | head -80

Repository: unraid/api

Length of output: 36


Remove unnecessary casting of mock ConfigService

The as unknown as ConfigService pattern bypasses type safety and violates the coding guideline to avoid casting. Use direct instantiation with vi.spyOn() instead, as demonstrated by the existing test setup at line 34.

This casting pattern appears at multiple locations in the test file (lines 157, 174, 193) and should be addressed consistently.

Example fix
-            const configService = {
-                get: vi.fn().mockReturnValue({
-                    'dynamix-base': join(tempDir, 'missing', 'dynamix-base'),
-                }),
-            } as unknown as ConfigService;
+            const configService = new ConfigService();
+            vi.spyOn(configService, 'get').mockReturnValue({
+                'dynamix-base': join(tempDir, 'missing', 'dynamix-base'),
+            });
             const configuredService = new UnraidPluginsService(configService);
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
const configService = {
get: vi.fn().mockReturnValue({
'dynamix-base': join(tempDir, 'missing', 'dynamix-base'),
}),
} as unknown as ConfigService;
const configuredService = new UnraidPluginsService(configService);
const configService: Partial<ConfigService> = {
get: vi.fn().mockReturnValue({
'dynamix-base': join(tempDir, 'missing', 'dynamix-base'),
}),
};
const configuredService = new UnraidPluginsService(configService as ConfigService);
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In
`@api/src/unraid-api/graph/resolvers/unraid-plugins/unraid-plugins.service.spec.ts`
around lines 170 - 175, Replace the mock ConfigService object creation that uses
the `as unknown as ConfigService` casting pattern with the `vi.spyOn()` approach
to maintain type safety and avoid unsafe casting. The current pattern at the
configService initialization violates type safety guidelines. Instead of
creating a mock object and casting it, use the spy approach demonstrated in the
existing test setup to properly mock the ConfigService without bypassing
TypeScript's type checking. Apply this fix consistently wherever this pattern
appears in the test file.

Source: Coding guidelines

Comment thread scripts/pnpm-audit.mjs
Comment on lines +9 to +13
const audit = spawnSync('pnpm', ['audit', '--json', ...args], {
cwd,
encoding: 'utf8',
stdio: ['ignore', 'pipe', 'pipe'],
});

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⚠️ Potential issue | 🟠 Major

🧩 Analysis chain

🌐 Web query:

What is the default maxBuffer for Node.js child_process.spawnSync, and what happens when stdout/stderr exceed that limit?

💡 Result:

The default maxBuffer for child_process.spawnSync in Node.js is 1024 * 1024 bytes (1 MB) [1][2]. When the amount of data written to stdout or stderr exceeds this limit, the child process is terminated, and any accumulated output is truncated [1][3]. The method will return an object containing the process's exit information, and the error property will typically reflect that the buffer limit was exceeded (often resulting in an ENOBUFS error) [4].

Citations:


🏁 Script executed:

cat -n scripts/pnpm-audit.mjs | head -40

Repository: unraid/api

Length of output: 1379


🏁 Script executed:

cat -n scripts/pnpm-audit.mjs | tail -n +40

Repository: unraid/api

Length of output: 6133


Set an explicit maxBuffer for spawnSync audit output.

The default maxBuffer limit of 1 MB can be exceeded by large audit payloads, causing stdout to be truncated and JSON.parse to fail silently on line 22.

Suggested fix
 const audit = spawnSync('pnpm', ['audit', '--json', ...args], {
   cwd,
   encoding: 'utf8',
+  maxBuffer: 10 * 1024 * 1024,
   stdio: ['ignore', 'pipe', 'pipe'],
 });
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
const audit = spawnSync('pnpm', ['audit', '--json', ...args], {
cwd,
encoding: 'utf8',
stdio: ['ignore', 'pipe', 'pipe'],
});
const audit = spawnSync('pnpm', ['audit', '--json', ...args], {
cwd,
encoding: 'utf8',
maxBuffer: 10 * 1024 * 1024,
stdio: ['ignore', 'pipe', 'pipe'],
});
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@scripts/pnpm-audit.mjs` around lines 9 - 13, The spawnSync call for the pnpm
audit command in the audit function does not specify an explicit maxBuffer
option, which defaults to 1 MB and can be exceeded by large audit payloads,
causing stdout truncation and JSON.parse failures. Add a maxBuffer property to
the options object passed to spawnSync with a significantly larger value (such
as 10 MB or higher) to accommodate large audit output without truncation.

Comment thread unraid-ui/package.json
"@vue/test-utils": "2.4.6",
"@vue/tsconfig": "0.8.1",
"ajv": "8.17.1",
"ajv": "8.20.0",

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⚠️ Potential issue | 🟠 Major

🧩 Analysis chain

🏁 Script executed:

#!/bin/bash
set -euo pipefail

echo -e "package\tpeerAjv\tdepAjv\tdevAjv"
jq -r '
  .name as $name
  | [
      $name,
      (.peerDependencies.ajv // "none"),
      (.dependencies.ajv // "none"),
      (.devDependencies.ajv // "none")
    ]
  | `@tsv`
' unraid-ui/package.json web/package.json

Repository: unraid/api

Length of output: 143


Align ajv peer dependency with the upgraded dev/consumer version.

Line 89 upgrades devDependencies.ajv to 8.20.0, but peerDependencies.ajv remains pinned to 8.17.1. The web/package.json package consumes ajv@8.20.0, creating a peer contract mismatch across workspaces.

Proposed fix
   "peerDependencies": {
-    "ajv": "8.17.1",
+    "ajv": "8.20.0",
     "tailwindcss": "4.1.12",
     "vue": "3.5.20"
   },
🤖 Prompt for AI Agents
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In `@unraid-ui/package.json` at line 89, The devDependencies for ajv has been
upgraded to 8.20.0, but the peerDependencies.ajv is still pinned to 8.17.1,
creating a version mismatch. Update the peerDependencies.ajv version from 8.17.1
to 8.20.0 to align with the upgraded devDependencies version and match what is
being consumed in web/package.json.

@elibosley elibosley force-pushed the codex/fix-dependency-audit-issues branch from 58b6f3b to a421619 Compare June 14, 2026 14:09
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🚀 Storybook has been deployed to staging: https://unraid-ui-storybook-staging.unraid-workers.workers.dev

@elibosley elibosley force-pushed the codex/fix-dependency-audit-issues branch from a421619 to 0baec05 Compare June 14, 2026 14:19
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🚀 Storybook has been deployed to staging: https://unraid-ui-storybook-staging.unraid-workers.workers.dev

@codecov

codecov Bot commented Jun 14, 2026

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Codecov Report

❌ Patch coverage is 33.33333% with 14 lines in your changes missing coverage. Please review.
✅ Project coverage is 52.64%. Comparing base (6f94aa1) to head (0baec05).

Files with missing lines Patch % Lines
web/__test__/setup.ts 0.00% 5 Missing ⚠️
web/src/components/Common/ResizableSlideover.vue 0.00% 3 Missing ⚠️
...d-ui/src/components/common/accordion/Accordion.vue 0.00% 2 Missing ⚠️
...nboarding/components/InternalBootConfirmDialog.vue 50.00% 2 Missing ⚠️
...rc/components/Docker/DockerContainerManagement.vue 0.00% 1 Missing ⚠️
web/src/composables/useContextMenu.ts 0.00% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #2028      +/-   ##
==========================================
+ Coverage   52.63%   52.64%   +0.01%     
==========================================
  Files        1035     1035              
  Lines       72034    72038       +4     
  Branches     8248     8253       +5     
==========================================
+ Hits        37917    37927      +10     
+ Misses      33991    33985       -6     
  Partials      126      126              

☔ View full report in Codecov by Harness.
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This plugin has been deployed to Cloudflare R2 and is available for testing.
Download it at this URL:

https://preview.dl.unraid.net/unraid-api/tag/PR2028/dynamix.unraid.net.plg

@elibosley elibosley marked this pull request as ready for review June 14, 2026 14:28

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💡 Codex Review

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Reviewed commit: 0baec05c03

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Comment thread scripts/pnpm-audit.mjs
updateVulnerabilityMetadata(report);

process.stdout.write(`${JSON.stringify(report, null, 2)}\n`);
process.exitCode = Object.keys(report.advisories ?? {}).length === 0 ? 0 : (audit.status ?? 1);

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P2 Badge Preserve audit failures for registry errors

When pnpm audit --json returns a JSON error object instead of an advisory list, this line treats the missing advisories object as empty and exits 0. I reproduced this with the current registry 403 response: node scripts/pnpm-audit.mjs printed ERR_PNPM_AUDIT_BAD_RESPONSE but returned success; pnpm audit --help documents --ignore-registry-errors as the option that should make registry errors exit 0, so without that flag CI will now pass even though the audit did not complete.

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