phasing and Allele Specific Expression from RNA-seq
Performs haplotype phasing using read alignments in BAM format from both DNA and RNA based assays, and provides measures of haplotypic expression for RNA based assays.
Developed by Stephane E. Castel in the Lappalainen Lab at the New York Genome Center and Columbia University Department of Systems Biology.
Please see our paper in Nature Communications for details and benchmarking of the method.
phASER is made available under the GNU GENERAL PUBLIC LICENSE v3.
Documentation Pages: phASER, phASER Annotate, phASER Gene AE
