Reproducible figure-generation code for retinal degeneration snRNA-seq and snATAC-seq analysis
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Jun 24, 2026 - R
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snatac-seq
Here are 8 public repositories matching this topic...
Code and data-access documentation for spatially resolved ferroptosis-associated states in glioblastoma.
r single-cell-rna-seq glioblastoma spatial-transcriptomics tumor-microenvironment snatac-seq ferroptosis
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Aug 19, 2026 - R
Computational analysis of single-nucleus ATAC-seq data to identify cell-type-specific MASLD-associated regulatory peaks not captured by liver eQTLs and link them to candidate genes using ABC, developed for HUJI’s Computational Genomics course (76553)
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Jun 30, 2026 - Python
Providing an easy way to extract the raw data from archR snATACSeq objects to produce in house visualizations of the results
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Aug 1, 2022 - R
scrna-seq segmentation spatial-analysis single-cell-analysis osteosarcoma fish-classification neuroblastoma snatac-seq
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Jun 29, 2026
snRNA+snATAC multiome of AD DLPFC microglia — chromVAR motif analysis, WNN integration, peak-to-gene linkage, Monocle3 trajectory | Signac · Seurat · R
bioinformatics r atac-seq single-cell alzheimers-disease epigenomics signac seurat microglia snrna-seq multiome monocle3 snatac-seq chromvar peak-to-gene
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Jun 29, 2026 - R
SSc skin yields six times fewer fibroblast nuclei than healthy skin in GSE312129, a composition confound for any between-group claim from that dataset.
reproducibility single-cell geo-dataset multiome snatac-seq systemic-sclerosis scleroderma multiomescanpy
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Sep 15, 2026 - Python
A tool for single cell genomics data processing and analysis
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Feb 11, 2025 - Shell
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