newick

Gotree: a set of command line tools and an API to manipulate phylogenetic trees.

Make phylogenetic trees and lineages from the NCBI Taxonomy database

Light phylogeny library for Rust

A Python library for creating a Newick formatted tree from a set of classification strings

An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data

Misc tools for newick format

Tools for node related operations in phylogenetic analyses.

GUI for NodeFinder Program

Read, write, and manipulate phylogenetic trees

Extracts a distance matrix from a phylogeny (parallel, low-memory)

This is our visualization project which was build for 2IOA0 DBL HTI + Webtech course (2017-2018) at the TU/Eindhoven.

High-performance Minimum Spanning Tree construction from distance matrices with Numba acceleration

Computation of the probabilities under Ford's alpha model of spanning binary trees and shape using Sage's Python.

Python package that implements split- and rank-based tools for inferring phylogenies, such as flattenings and subflattenings.

necom — NWK, CLUST, and MAT Toolkit

A standalone Newick tree reader in Java

A modern React library for interactive phylogenetic tree visualization, supporting Newick trees, zooming, panning, rerooting, clade interaction, and customizable layouts.

A Java library for event-based reading and writing of different phylogenetic file formats through a common interface

Package for reading the Newick format

Phylogenetic tree animation and interpolation software for sliding-window, recombination, and rogue-taxa analyses.