Metagenotyping analysis in R
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Updated
Dec 26, 2024 - R
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metagenotyping
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Pstrain profiles strains in metagenomics data. It infers strain abundance and genotype for each species. Also, it has a single species mode; where given a BAM and VCF, it can phase the variants for any species.
snp phase strain marker-gene-analysis metagenomics-toolkit profile-strains metaphlan3 metagenotyping genotype-frequency microbial-strain
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May 16, 2024 - Shell
Metagenomic Intra-Species Diversity Analysis 2 using GPU
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Updated
Feb 21, 2024 - Python
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