Recentrifuge: robust comparative analysis and contamination removal for metagenomics
An open-source R package containing decontamination pipelines for low-biomass microbiome data
Sensitivity analysis and QC tools for choosing decontam thresholds in microbiome studies
The structure of total and viable microbial communities from the atmosphere was monitored during a small snowfall event in the University of Guelph Arboretum. We sought to understand the impact of snowfall to shape the aeromicrobiome alongside influences from surrounding surface environments.
End-to-end Nextflow pipeline for ONT metagenomics of low-biomass respiratory microbiomes: QC, host removal, taxonomy, abundance, contamination, AMR/VF/MGE, MERIDIAN downstream analysis
A 16S-rRNA interactive analysis workflow written in R. Contains modular sections devoted to QC, filtering, diversity analysis, and taxonomic/phylogenetic visualisations.
16S sequencing analysis pipeline for low biomass samples
To associate your repository with the low-biomass topic, visit your repo's landing page and select "manage topics."