genetic-circuits

Tool to analyze bacterial fluorescence in time-lapse microscopy

Archived prototype exploring evidence governance, provenance, and claim boundaries in AI-assisted genetic circuit design workflows.

A synthetic biology logic circuit that combines memory, logic gating, and reset to simulate FSM-like behavior using AraC, IPTG, AHL, and GFP.

Proyecto de sistemas dinamicos basado en el circuito genetico Repressilator.

Synthetic biology Verilog logic gates for smart contextual tumor microenvironment destruction via Cello compilation flow

Repositorio de código del TFG de Física. Modelo del reloj de segmentación de la somitogénesis.

My submissions for the Advanced Special Topics I course that I took at UNBC in 2021.

Another Genetic Circuit Transcriber

GenCircuitLab — Interactive Synthetic Biology & Genetic Circuit Design Laboratory. 6 modules: toggle switch, repressilator, CRISPR logic gates, GRN builder, Gillespie SSA, metabolic flux analysis. Zero dependencies.

A synthetic biology computing framework and structural logic compiler transforming E. coli DNA arrays into addressable, non-volatile CRISPRi-clamped storage registers.

Open-source platform for designing, simulating, and screening genetic constructs. Every prediction carries its uncertainty; nothing reaches synthesis without screening. Early stage: foundation built, models not yet written.

A playable genetic circuit simulation game where players test logic-based inputs (IPTG, AHL, aTc) and navigate synthetic feedback loops. Built with Tellurium, Streamlit, and a custom FSM engine. Includes two working levels and real-time biological modeling.

Code for article "A Linear Mixed Effects Model for Evaluating Synthetic Gene Circuits" published in ACS Synthetic Biology

Compilable Verilog orchestrator for targeted 256-bit cryptographic parameter injection into neuronal microtubule lattices via rAAV vectors using Cello CAD

This project is a model-first, constraint-aware approach to engineering E. coli Nissle 1917 (EcN) as a gut sentinel: sensing context, responding with targeted antimicrobials, and remaining governable through built-in containment.