scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.
Codebase for the synthetic lethality project -- an innovative approach for condition-specific antiviral therapeutics.
simCRISPR is an R package for simulating pooled CRISPR screening data under various experimental designs.
Runnable Perturb-seq analysis pipeline (guide assignment, Mixscape, pseudobulk-vs-per-cell DE, E-distance) on the Papalexi 2021 ECCITE-seq CRISPR screen — pertpy + scanpy
Universal base editing and CRISPR screen analysis tool.
CRISPR Screen Analysis Pipeline & Workflow for Abt & Wang et al., 2026 (Jack Freeland / jfreeland01)
Evidence-integrating pipeline that nominates novel, druggable small-molecule cancer targets from DepMap dependency, synthetic lethality, single-cell specificity, safety, and tractability — with an LLM nomination ensemble and a gene-masking bias control. Validated on glioblastoma.
MAGeCK CRISPR screen hit-calling + clusterProfiler enrichment on a real published pooled screen (Wang et al. 2014)
Add a description, image, and links to the crispr-screen topic page so that developers can more easily learn about it.
To associate your repository with the crispr-screen topic, visit your repo's landing page and select "manage topics."