Surveillance of pathogens using population genomics and sequencing
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Oct 27, 2026 - Nextflow
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biosurveillance
Here are 10 public repositories matching this topic...
Smart Environmental Nucleic-acid Tracking using Inference from Neural-networks for Early-warning Localization
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Sep 13, 2025
Detect novel bacterial taxa in metagenomic data using ANI-weighted placement uncertainty. Distinguishes true novelty from taxonomic ambiguity by combining competitive read recruitment with genome-genome ANI matrices. Species/genus classification with literature-backed thresholds.
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Nov 2, 2026 - Python
BIOWATCH AI — A research-grade biological surveillance and epidemiology monitoring prototype with open data connectors, anomaly detection engines, and epistemic-honest visualizations.
single-page-app public-health epidemiology world-map outbreak-detection zero-dependencies responsible-ai research-prototype syndromic-surveillance biosurveillance svg-visualization epistemic-honesty
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Sep 17, 2026 - JavaScript
SeqScreen wrapper exposing the biosurveillance pipeline as MCP tools. Built for the Apart AI × Biosecurity Hackathon, April 2026.
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Apr 25, 2026 - HTML
Physics-informed distributional features for pathogen-agnostic threat detection in gene expression data
machine-learning bioinformatics entropy cross-platform physics gene-expression radiation zipf gini-coefficient cbrn scaling-laws biosurveillance infection-detection biodosimetry distributional-features
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May 10, 2026 - Python
Two-stage metagenomic screening and in-silico confirmation of high-consequence pathogens (human/animal/plant). Research code; not validated for diagnostic use.
bioinformatics nanopore nextflow reproducible-research metagenomics pathogen-detection one-health biosurveillance
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Oct 26, 2026 - Python
Metagenomic Bio surveillance Analyst-Interview-QA
bioinformatics interview metagenomics interviews interview-questions interview-preparation interview-tips biosurveillance
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Aug 28, 2026
infrastructure real-time analytics surveillance saas public-health epidemiology wastewater municipal biosurveillance
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Jul 6, 2026 - Python
Quantum kernel SVM for rapid Ebola strain triage (Bundibugyo · Zaire · Sudan · Non-HF). ZZFeatureMap encoding of 20 clinical features. Motivated by the 2026 DRC/Uganda Bundibugyo PHEIC. PennyLane · scikit-learn · imbalanced learning.
python ebola quantum-machine-learning imbalanced-learning medical-ai clinical-informatics pennylane qsvm quantum-kernel outbreak-response-modelling biosurveillance haemorrhagic-fever zz-feature-map geometric-difference
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Jun 4, 2026 - Python
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