Issues

• GraphOTTOutput.transport_matrix returns the expanded (n+m)² matrix, not the (n, m) block

  theislab/moscot#847 · Filter by author Marius1311 opened on Aug 24, 2026

• ott-jax incompatible with JAX >= 0.9 (is_vmappable removed) — online/batched OT broken

  theislab/moscot#842 · Filter by author Marius1311 opened on Jun 5, 2026
  1

• Incorporating Biological Priors and integrating multiple dataset

  theislab/moscot#841 · Filter by author AtlasMaroc opened on Mar 20, 2026

• Interpolation with moscot

  theislab/moscot#840 · Filter by author sandeepkambhampati opened on Nov 30, 2025
  1

• Issue with Proportional Splitting in Sankey Diagram for RunX1ko Genotype Using MOSCOT

  theislab/moscot#835 · Filter by author nkhatriodu opened on Jul 30, 2025
  1

• BirthDeathProblem.solve Error: tp1[8, 9].set_graph_xy(dfs[8, 9].astype("float"), t=100.0)

  theislab/moscot#834 · Filter by author Yulab2022 opened on Jul 26, 2025
  4

• Add multi-GPU support

  theislab/moscot#803 · Filter by author MUCDK opened on Feb 24, 2025
  

• Add reasonable ranges for hparams to user guide

  theislab/moscot#781 · Filter by author MUCDK opened on Jan 13, 2025
  

• No error to check convergence in output of SpatioTemporalProblem

  documentationexamples
  theislab/moscot#768 · Filter by author matthieuheitz opened on Dec 5, 2024
  11

  

• Refactoring moscot to include moscot.neural

  theislab/moscot#763 · Filter by author MUCDK opened on Nov 7, 2024
  5

  

• Full rank initializers

  theislab/moscot#734 · Filter by author MUCDK opened on Jul 10, 2024
  1

  

• .impute consumes too much memory

  theislab/moscot#729 · Filter by author Marius1311 opened on Jul 5, 2024
  5

  

• Refactor: Check if both x and x_callback is given

  low-prio
  theislab/moscot#715 · Filter by author selmanozleyen opened on Jun 14, 2024
  2

  

• Unbalance FGW full rank marginal normalization issue

  theislab/moscot#691 · Filter by author giovp opened on Apr 30, 2024 · Fixes for FGW full rank
  7

  

• Add examples for advanced data passing, e.g. how to pass x_attr/y_attr

  theislab/moscot#643 · Filter by author MUCDK opened on Jan 8, 2024
  2

  

• symbol column key argument when using gene sets

  low-prio
  theislab/moscot#608 · Filter by author ivirshup opened on Sep 26, 2023
  1

  

• Add .copy method

  low-prio
  theislab/moscot#601 · Filter by author Marius1311 opened on Sep 5, 2023
  

• Pull/push in a batch-wise fashion

  theislab/moscot#592 · Filter by author Marius1311 opened on Aug 11, 2023
  3

  

• Jit the apply function

  theislab/moscot#577 · Filter by author MUCDK opened on Jul 10, 2023
  

• Unify the way push/pull results are saved.

  theislab/moscot#576 · Filter by author MUCDK opened on Jul 10, 2023
  

• Batch-wise computation of gene imputation.

  enhancement
  theislab/moscot#569 · Filter by author MUCDK opened on Jun 26, 2023
  

• Make resolution of sankey strips a variable

  theislab/moscot#527 · Filter by author MUCDK opened on Apr 16, 2023

• get same output when pulling/pushing a vector on problem level or solution level

  conceptual
  theislab/moscot#518 · Filter by author MUCDK opened on Apr 6, 2023
  

• Add names of base methods in corresponding problem classes

  documentation
  theislab/moscot#513 · Filter by author MUCDK opened on Apr 4, 2023
  

• Simplify/improve typing

  low-prio
  theislab/moscot#491 · Filter by author michalk8 opened on Mar 10, 2023