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Microbiome-informed plant breeding framework in R

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MicroBreedR

An R package for microbiome-informed plant breeding.# MicroBreedR

An Open-Source Framework for Microbiome-Informed Plant Breeding

MicroBreedR integrates plant genomics, microbiome data, phenotypic traits, environmental information, and predictive breeding approaches to support next-generation crop improvement.

Vision

MicroBreedR aims to integrate:

  • Plant genomics
  • Microbiome data
  • Phenotypic traits
  • Environmental variables
  • Multi-omics analyses

to enable microbiome-assisted breeding and crop improvement.

Current Development Status

✅ Package initialized

✅ Data import functions implemented

🚧 Diversity analysis module in development

🚧 Host-microbiome association module in development

Installation

Coming soon.

Author

Tariq Shah

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Microbiome-informed plant breeding framework in R

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