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Add latest SIR-compatible version of tracer-advection #92

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@arporter

Work on PSyclone and Dusk/Dawn now means that we can keep all of the compute in a single subroutine. However, local scalars must be replaced by their values and one loop nest that writes to (ji,jj,jk+1) must be transformed so as to write to (ji,jj,jk).

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