Issues

• Differing depth than coverage in IGV

  single-cell-genetics/cellSNP#38 · Filter by author robert-a-forsyth opened on Dec 16, 2025
  1

• Best Practice for Demultiplexing C57BL6/J Mixed snRNA-seq Samples Using CellSNP + Vireo?

  single-cell-genetics/cellSNP#37 · Filter by author AxisJu opened on Feb 19, 2025

• Adapting cellSNP for gene-of-interest / indels / multiple scRNA-seq samples

  single-cell-genetics/cellSNP#36 · Filter by author ychenab opened on Jun 20, 2023

• generating VCF for REGION_VCF from RNA-seq data

  single-cell-genetics/cellSNP#35 · Filter by author gebdu opened on Mar 24, 2023
  1

• AD in cells

  single-cell-genetics/cellSNP#19 · Filter by author penglbio opened on Nov 28, 2020
  1

• Some SNPs are not in gene

  single-cell-genetics/cellSNP#18 · Filter by author penglbio opened on Nov 24, 2020
  1

• Reference Genome

  single-cell-genetics/cellSNP#15 · Filter by author OldManTae opened on Jul 16, 2020
  1

• Running cellSNP on transcriptomic BAM from salmon alevin

  single-cell-genetics/cellSNP#14 · Filter by author lmweber opened on Jul 13, 2020
  4

• Run time estimation

  single-cell-genetics/cellSNP#9 · Filter by author PeteHaitch opened on Feb 3, 2020
  3

• No SNPs called in more than 1 barcodes

  single-cell-genetics/cellSNP#8 · Filter by author saisomesh2594 opened on Nov 20, 2019
  3

• Default nan-handling policy is a memory hog

  single-cell-genetics/cellSNP#5 · Filter by author ivanov-v-v opened on Jul 26, 2019
  1

• Optimisation suggestions

  single-cell-genetics/cellSNP#1 · Filter by author Shians opened on Mar 3, 2019
  1