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`co_occurence` reimplementation benchmark - #1015

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selmanozleyen wants to merge 26 commits into

scverse:mainfrom

selmanozleyen:numba-co-occur-benchmark

Closed

`co_occurence` reimplementation benchmark#1015
selmanozleyen wants to merge 26 commits into
scverse:mainfrom
selmanozleyen:numba-co-occur-benchmark

Commits on Mar 18, 2025
- perf implement rust co-occurrence statistics
  wenjie1991
  committed
  2023996
- misc: change rust-py deps
  wenjie1991
  committed
  e51f546
- doc: improve the documentation
  wenjie1991
  committed
  a5b8226
Commits on Mar 19, 2025
- add python re-implementation
  MDLDan
  committed
  f7ff293
- [pre-commit.ci] auto fixes from pre-commit.com hooks
  pre-commit-ci[bot]
  committed
  9af4252
- Clean the tests and dependencies
  wenjie1991
  committed
  9457767
- Merge branch 'numba-co-occurrence' of github.com:wenjie1991/squidpy into numba-co-occurrence
  wenjie1991
  committed
  0ec6985
- [pre-commit.ci] auto fixes from pre-commit.com hooks
  pre-commit-ci[bot]
  committed
  92f3da5
- Merge branch 'main' into numba-co-occurrence
  wenjie1991
  authored
  ad674ad
Commits on Mar 28, 2025
- Merge branch 'main' into numba-co-occurrence
  timtreis
  authored
  057decc
- Merge branch 'main' into numba-co-occurrence
  wenjie1991
  authored
  26200d3
Commits on Jun 12, 2025
- Merge branch 'scverse:main' into numba-co-occurrence
  wenjie1991
  authored
  c2a57ac
- Optimize memory access pattern & cache kernel
  wenjie1991
  committed
  52a5fae
- jit the outer function and parallelize
  wenjie1991
  committed
  cee646a
- [pre-commit.ci] auto fixes from pre-commit.com hooks
  pre-commit-ci[bot]
  committed
  05dd724
- Fix Mypy checking Typing error
  wenjie1991
  committed
  c490d45
- Merge branch 'numba-co-occurrence' of github.com:wenjie1991/squidpy into numba-co-occurrence
  wenjie1991
  committed
  7b72292
- [pre-commit.ci] auto fixes from pre-commit.com hooks
  pre-commit-ci[bot]
  committed
  d0884ca
- Disable the cast typing in jit
  wenjie1991
  committed
  6e5d1df
- merge
  wenjie1991
  committed
  63702d1
- Try fix typing check error by mypy
  wenjie1991
  committed
  a62128b
Commits on Jun 14, 2025
- Try: fix typing check error by mypy
  wenjie1991
  committed
  0aab856
- Try: fix typing check error by mypy
  wenjie1991
  committed
  9ac2693
Commits on Jun 21, 2025
- Merge branch 'main' into numba-co-occurrence
  wenjie1991
  authored
  5303de0
Commits on Jul 10, 2025
- init for benchmark
  selmanozleyen
  committed
  482d0d8
- add the array order and stuff later. Also sparse vs dense later maybe
  selmanozleyen
  committed
  18a767c

Commits

Commits on Mar 18, 2025

Commits on Mar 19, 2025

Commits on Mar 28, 2025

Commits on Jun 12, 2025

Commits on Jun 14, 2025

Commits on Jun 21, 2025

Commits on Jul 10, 2025