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feat: add bbknn - #4306

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Intron7 wants to merge 4 commits into
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feat/add-bbknn
Open

feat: add bbknn#4306
Intron7 wants to merge 4 commits into
mainfrom
feat/add-bbknn

batch_key→batches

b095f2c
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Codecov / codecov/project succeeded Aug 21, 2026 in 0s

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Details

Codecov Report

❌ Patch coverage is 92.50000% with 9 lines in your changes missing coverage. Please review.
⚠️ Please upload report for BASE (main@e6269f5). Learn more about missing BASE report.
✅ All tests successful. No failed tests found.

Files with missing lines Patch % Lines
src/scanpy/neighbors/_common.py 61.90% 8 Missing ⚠️
src/scanpy/neighbors/_bbknn.py 98.90% 1 Missing ⚠️
Additional details and impacted files
@@           Coverage Diff           @@
##             main    #4306   +/-   ##
=======================================
  Coverage        ?   80.12%           
=======================================
  Files           ?      134           
  Lines           ?    13534           
  Branches        ?        0           
=======================================
  Hits            ?    10844           
  Misses          ?     2690           
  Partials        ?        0           
Files with missing lines Coverage Δ
src/scanpy/_utils/__init__.py 75.79% <ø> (ø)
src/scanpy/external/pp/_bbknn.py 100.00% <100.00%> (ø)
src/scanpy/neighbors/_types.py 100.00% <100.00%> (ø)
src/scanpy/preprocessing/__init__.py 100.00% <100.00%> (ø)
src/scanpy/neighbors/_bbknn.py 98.90% <98.90%> (ø)
src/scanpy/neighbors/_common.py 72.54% <61.90%> (ø)