mdanalysis: Add version 2.10.0 - #2645
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The released 2.10.0 fails its own suite with today's dependencies on every architecture: numpy 2.5's linalg.eig returns complex eigenvectors, which breaks AtomGroup.align_principal_axis(), and pytest 9.1 rejects a trailing comma in a parametrize argnames string, which fails collection of TestAtomGroupToTopology. Both are fixed upstream for 2.11.0.
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October 2, 2026 21:36
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mdanalysis2.10.0Compiles 14 Cython/C/C++ extensions (distances, neighbour search, trajectory readers, encore), with OpenMP. Upstream publishes no riscv64 wheel.
Mirrors upstream's
deploy.yaml.Differs from upstream
Matrix: cp312/cp313/cp314; upstream ships no free-threaded wheel.
Testing
pytest --pyargs MDAnalysisTestsinstall check against the wheel, with MDAnalysisTests from the same checkout and the minimal test deps.License: Wheel bundles libgomp (GPL-3.0-or-later with the GCC Runtime Library Exception); its sources are attached to the release.
Patches
0001-Fixed-typo-in-test_atomgroup.py.patch- Backport 8783f8d. pytest 9.1 fails collectingTestAtomGroupToTopology. Not riscv64-specific.0002-Fix-compatibility-with-numpy-2.5.patch- Backport #5404. numpy 2.5 makesalign_principal_axis()raiseTypeError. Not riscv64-specific.Built on cp312; 20504 passed, 905 skipped.