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Compute ViennaRNA partition function for richer interaction scoring

enhancementNew feature or requestNew feature or request

Status: Open.

#31 In riasc/RNAnue;

· riasc opened on May 18, 2026

Reduce build warning noise from SeqAn3 and Boost transitive headers

choreMaintenance, dependencies, toolingMaintenance, dependencies, tooling

Status: Open.

#26 In riasc/RNAnue;

· riasc opened on May 18, 2026

Preproc: R2-only branch writes forward read instead of reverse

bugSomething isn't workingSomething isn't working

Status: Open.

#23 In riasc/RNAnue;

· riasc opened on May 18, 2026

Code modernization: missing const, C-style headers, dead code, auto& overuse

Status: Open.

#12 In riasc/RNAnue;

· riasc opened on Mar 7, 2026

Performance: regex in hot loop, in-memory BAM sort, shell-per-read hybridization

Status: Open.

#11 In riasc/RNAnue;

· riasc opened on Mar 7, 2026

Miscellaneous memory safety: VLA, Rule of Five, platform-specific types

Status: Open.

#8 In riasc/RNAnue;

· riasc opened on Mar 7, 2026

Expand test coverage for core logic

Status: Open.

#4 In riasc/RNAnue;

· riasc opened on Mar 6, 2026

Security: command injection risk in hybridization() and unsafe temp file naming

Status: Open.

#2 In riasc/RNAnue;

· riasc opened on Mar 6, 2026