scripts

Scripts I use day to day for all things. Mostly for personal use. My place to learn what NOT to do in terms of variable names and code documentation. Be warned!!

Name		Name	Last commit message	Last commit date
GT_scripts		GT_scripts
example_files/multiomics_TCGA_breastCancer		example_files/multiomics_TCGA_breastCancer
unused		unused
.gitignore		.gitignore
ProteinModelSelection.pl		ProteinModelSelection.pl
README.md		README.md
add_prefixnum.py		add_prefixnum.py
add_taxToNr.pl		add_taxToNr.pl
add_vis_pml.sh		add_vis_pml.sh
align_all_to_all.py		align_all_to_all.py
analyze_structures_new.py		analyze_structures_new.py
bash_profile_template.sh		bash_profile_template.sh
batch_wget.pl		batch_wget.pl
build_network.py		build_network.py
build_sma-old.sh		build_sma-old.sh
build_sma.sh		build_sma.sh
build_sma_lite.sh		build_sma_lite.sh
check_bioperl.pl		check_bioperl.pl
check_param_nmr.sh		check_param_nmr.sh
check_perl_module.pl		check_perl_module.pl
check_xml.pl		check_xml.pl
clustalx_ss_color2.xbel		clustalx_ss_color2.xbel
cluster.m		cluster.m
cma2shortfa.sh		cma2shortfa.sh
cmp_fasta_aln.pl		cmp_fasta_aln.pl
cmp_files.sh		cmp_files.sh
cmp_trees.py		cmp_trees.py
codon_distribution.pl		codon_distribution.pl
codon_distribution2.pl		codon_distribution2.pl
codon_distribution_scer.pl		codon_distribution_scer.pl
codon_plot.R		codon_plot.R
color_b.py		color_b.py
color_tree.pl		color_tree.pl
combine_waterInfo.py		combine_waterInfo.py
compare_cma.pl		compare_cma.pl
compare_files.pl		compare_files.pl
compare_orthologs.pl		compare_orthologs.pl
compare_trees.py		compare_trees.py
consensus.pl		consensus.pl
conv_sca_pos.pl		conv_sca_pos.pl
convert_orthoXML_to_tsv.pl		convert_orthoXML_to_tsv.pl
count_aligned_hmm.pl		count_aligned_hmm.pl
count_distribution.R		count_distribution.R
count_inserts.pl		count_inserts.pl
draw_graphic.pl		draw_graphic.pl
dumpprof.py		dumpprof.py
edit_all_alignments.pl		edit_all_alignments.pl
edit_all_alignments_nosub.pl		edit_all_alignments_nosub.pl
edit_fasta_ID.pl		edit_fasta_ID.pl
edit_fasta_ID_batch.pl		edit_fasta_ID_batch.pl
edit_nwk_ID.pl		edit_nwk_ID.pl
esearch.pl		esearch.pl
esearch_cl.pl		esearch_cl.pl
extra_fit.py		extra_fit.py
extra_fit.pyc		extra_fit.pyc
extract_positions.pl		extract_positions.pl
extract_substring.pl		extract_substring.pl
fastaSortByName.pl		fastaSortByName.pl
fastaToCsv.pl		fastaToCsv.pl
find_dom.pymol		find_dom.pymol
findseq.py		findseq.py
findseq.pyc		findseq.pyc
fix_cma.pl		fix_cma.pl
function_check.sh		function_check.sh
gen_fig.R		gen_fig.R
gen_md_dist.pl		gen_md_dist.pl
get-SecStrPdb.py		get-SecStrPdb.py
get-inserts-specific.pl		get-inserts-specific.pl
get-inserts.pl		get-inserts.pl
get-pos-num.pl		get-pos-num.pl
get-seq-bioperl.pl		get-seq-bioperl.pl
get-seq-bioperl2.pl		get-seq-bioperl2.pl
get-seq-bioperl_nochange1.pl		get-seq-bioperl_nochange1.pl
get-seq-bioperl_nochange2.pl		get-seq-bioperl_nochange2.pl
get-seq-eutil.sh		get-seq-eutil.sh
get-seq-regex.pl		get-seq-regex.pl
get-seq-table.pl		get-seq-table.pl
get-sma-from-hpt.pl		get-sma-from-hpt.pl
get-tax-eutil.sh		get-tax-eutil.sh
get_aligned_pos.pl		get_aligned_pos.pl
get_avg_insertHVs.pl		get_avg_insertHVs.pl
get_consensus.pl		get_consensus.pl
get_desc_Fasta_hmm.pl		get_desc_Fasta_hmm.pl
get_jsdivergence.py		get_jsdivergence.py
get_lines.pl		get_lines.pl
get_nodes.py		get_nodes.py
get_nr_old.sh		get_nr_old.sh
get_nwk_IDs.py		get_nwk_IDs.py
get_pdb.pl		get_pdb.pl
get_pdb_bounds.pl		get_pdb_bounds.pl
get_pdb_bounds_ByResidue.pl		get_pdb_bounds_ByResidue.pl
get_pfamSeed.pl		get_pfamSeed.pl
get_plots_temp.py		get_plots_temp.py
get_pml.py		get_pml.py
get_rungaps_table.pl		get_rungaps_table.pl
get_seq_db.pl		get_seq_db.pl
get_seq_eutil.pl		get_seq_eutil.pl
get_seq_eutil.py		get_seq_eutil.py
get_seq_eutil_acc.pl		get_seq_eutil_acc.pl
get_tax_ete.fix.py		get_tax_ete.fix.py

Navigation Menu

Repository navigation

About

Repository files navigation

scripts

About

Releases

Packages

Used by

Contributors

Languages

Latest commit

History

Folders and files

Repository files navigation

scripts

About

Resources

Stars

Watchers

Forks

Releases

Packages

Used by

Contributors

Languages