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Environments and code repos: relocking, worktree src/, kernels, rapids - #6
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The main checkout's environment installs the repo's package and editable code repos from the main checkouts, so edits made in a worktree are invisible to it until merged and pulled. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
…s; code-repo worktrees; rapids A task that changes pixi.toml relocks in a temporary checkout beside the main one; only the human installs. A worktree's src/ runs via PYTHONPATH. Kernels skip pixi activation. Code-repo changes get their own worktree from the same session. Large single-cell compute uses rapids-singlecell. Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
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Rules agent sessions had kept in local notes, now in the skill:
pixi.tomlrelocks itself, in a temporary checkout beside the main one (where the relative path dependencies resolve); only the human installs, after the merge. The pixi guard's message and session rule 6 say the same.src/edits don't reach the main environment; prepend thatsrc/toPYTHONPATHto run them (checked for the repo's own package and an editable code repo).pixi installrewrites path-dependency entries inpixi.lock; discard that diff before pulling.pythoncalls skip pixi activation.Rebased on 0.2.1.
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