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1. NygenAnalytics/scarf NygenAnalytics/scarf Public

   Memory-efficient single-cell analysis in Python. Stream RNA, ATAC, CITE-seq and multi-omics from local or remote Zarr stores, from laptop to atlas scale, with reusable fingerprinted results.

   Python 125 18

2. NygenAnalytics/CyteTypeR NygenAnalytics/CyteTypeR Public

   Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

   R 40 2

3. NygenAnalytics/CyteType NygenAnalytics/CyteType Public

   Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data

   Python 136 17

4. NygenAnalytics/CyteOnto NygenAnalytics/CyteOnto Public

   Automated semantic comparison of cell type annotations

   Python 6 2