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@RodriguezColmanLab Rodriguez Colman Lab

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    Repositories list

    9 repositories

    • CellPhenTracker

      Public
      Set of OrganoidTracker plugins to measure and analyse fluorescent intensities.
      Python
      •0•0•0•0•Updated Sep 16, 2026Sep 16, 2026

    • dpct

      Public
      Dynamic Programming Cell Tracking Solver
      C++
      •
      MIT License
      •1•0•0•0•Updated Sep 9, 2026Sep 9, 2026

    • napari-organoidtracker

      Public
      Allows you to read OrganoidTracker files into Napari
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 8, 2026Sep 8, 2026

    • Metaboglobe

      Public
      Plot KEGG pathways with highlighted fluxes/metabolites
      Python
      •0•0•0•0•Updated Aug 24, 2026Aug 24, 2026

    • NuclearIDTracker

      Public
      Predicts cell types based on nucleus features (morphology, neighborhood). Allows for observing cell types in mouse small intestinal organoid time lapses.
      Jupyter Notebook
      •0•0•0•0•Updated Jul 10, 2026Jul 10, 2026

    • KaryoMetab

      Public
      Reproducible computational workflow for the joint inference of chromosomal instability (CIN) patterns and metabolic states from single-cell RNA-seq data
      R
      •
      Other
      •0•2•0•0•Updated Jul 2, 2026Jul 2, 2026

    • CMMCells

      Public
      Game for the open day of the CMM Utrecht
      Game Maker Language
      •
      MIT License
      •0•0•0•0•Updated May 6, 2025May 6, 2025

    • in_vitro_droplet_assay

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 13, 2023Dec 13, 2023

    • .github

      Public
      0•0•0•0•Updated Jan 25, 2023Jan 25, 2023
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