Repositories list

• Benchmarking-shallow-Metagenomics

  Public

  ClavelLab/Benchmarking-shallow-Metagenomics’s past year of commit activity
  Shell

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  MIT License

  •22 forks in ClavelLab/Benchmarking-shallow-Metagenomics•55 stars in ClavelLab/Benchmarking-shallow-Metagenomics•00 issues in ClavelLab/Benchmarking-shallow-Metagenomics•00 pull requests in ClavelLab/Benchmarking-shallow-Metagenomics•Updated Jul 13, 2026Jul 13, 2026

• maldipickr_manuscript

  Public

  ClavelLab/maldipickr_manuscript’s past year of commit activity
  Worfklow for the data analysis in the maldipickr manuscript

  R

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  GNU General Public License v3.0

  •00 forks in ClavelLab/maldipickr_manuscript•00 stars in ClavelLab/maldipickr_manuscript•00 issues in ClavelLab/maldipickr_manuscript•00 pull requests in ClavelLab/maldipickr_manuscript•Updated Jun 30, 2026Jun 30, 2026

• maldipickr

  Public

  ClavelLab/maldipickr’s past year of commit activity
  Dereplicate And Cherry-pick Mass Spectrometry Spectra

  rrstatscherry-pick+ 3

  rrstatscherry-pickmaldi-tof-msdereplicationr-packages

  R

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  GNU General Public License v3.0

  •11 fork in ClavelLab/maldipickr•33 stars in ClavelLab/maldipickr•55 issues in ClavelLab/maldipickr•00 pull requests in ClavelLab/maldipickr•Updated Jun 23, 2026Jun 23, 2026

• pocpbenchmark_manuscript

  Public

  ClavelLab/pocpbenchmark_manuscript’s past year of commit activity
  Code and manuscript for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

  TeX

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  GNU General Public License v3.0

  •00 forks in ClavelLab/pocpbenchmark_manuscript•00 stars in ClavelLab/pocpbenchmark_manuscript•00 issues in ClavelLab/pocpbenchmark_manuscript•00 pull requests in ClavelLab/pocpbenchmark_manuscript•Updated Nov 15, 2025Nov 15, 2025

• pocpbenchmark

  Public

  ClavelLab/pocpbenchmark’s past year of commit activity
  Nextflow workflow for benchmarking proteins alignment tools for improved genus delineation using the Percentage Of Conserved Proteins (POCP)

  Nextflow

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  MIT License

  •00 forks in ClavelLab/pocpbenchmark•00 stars in ClavelLab/pocpbenchmark•00 issues in ClavelLab/pocpbenchmark•00 pull requests in ClavelLab/pocpbenchmark•Updated Nov 15, 2025Nov 15, 2025

• hibc

  Public

  ClavelLab/hibc’s past year of commit activity
  Shiny application to display data and metadata for The Human Intestinal Bacterial Collection (HiBC)

  R

  •00 forks in ClavelLab/hibc•00 stars in ClavelLab/hibc•00 issues in ClavelLab/hibc•00 pull requests in ClavelLab/hibc•Updated Sep 1, 2025Sep 1, 2025

• github-repo-stats

  Public

  ClavelLab/github-repo-stats’s past year of commit activity
  Statistics aggregation for Github repositories for NFDI4Microbiota KPI

  11 fork in ClavelLab/github-repo-stats•00 stars in ClavelLab/github-repo-stats•00 issues in ClavelLab/github-repo-stats•00 pull requests in ClavelLab/github-repo-stats•Updated Apr 28, 2025Apr 28, 2025

• Protologger

  Public

  ClavelLab/Protologger’s past year of commit activity
  Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights

  Python

  •33 forks in ClavelLab/Protologger•00 stars in ClavelLab/Protologger•00 issues in ClavelLab/Protologger•00 pull requests in ClavelLab/Protologger•Updated Mar 31, 2025Mar 31, 2025

• MiMiC2

  Public

  ClavelLab/MiMiC2’s past year of commit activity
  A workflow for the creation of synthetic communities that are functionally representative of an ecosystem.

  Python

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  GNU General Public License v2.0

  •55 forks in ClavelLab/MiMiC2•00 stars in ClavelLab/MiMiC2•00 issues in ClavelLab/MiMiC2•00 pull requests in ClavelLab/MiMiC2•Updated Mar 18, 2025Mar 18, 2025

• genome-assembly

  Public

  ClavelLab/genome-assembly’s past year of commit activity
  A Snakemake workflow assembling bacterial genomes according to the standard operating procedure in the Clavel Lab

  snakemakegenome-assemblysnakemake-workflows+ 1

  snakemakegenome-assemblysnakemake-workflowsbacterial-genomes

  Python

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  MIT License

  •11 fork in ClavelLab/genome-assembly•44 stars in ClavelLab/genome-assembly•00 issues in ClavelLab/genome-assembly•00 pull requests in ClavelLab/genome-assembly•Updated Mar 4, 2025Mar 4, 2025

• consprot

  Public
  High-throughput delineation of bacterial genera

  Nextflow

  •00 forks in ClavelLab/consprot•00 stars in ClavelLab/consprot•11 issue in ClavelLab/consprot•00 pull requests in ClavelLab/consprot•Updated Nov 15, 2024Nov 15, 2024

• template-dereplication-workflow

  Public
  Workflow template to dereplicate and cherry-pick mass spectrometry spectra

  R

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  GNU General Public License v3.0

  •00 forks in ClavelLab/template-dereplication-workflow•00 stars in ClavelLab/template-dereplication-workflow•11 issue in ClavelLab/template-dereplication-workflow•00 pull requests in ClavelLab/template-dereplication-workflow•Updated Nov 14, 2024Nov 14, 2024

• miBC

  Public
  The Mouse Intestinal Bacterial Collection

  11 fork in ClavelLab/miBC•11 star in ClavelLab/miBC•00 issues in ClavelLab/miBC•00 pull requests in ClavelLab/miBC•Updated Apr 24, 2024Apr 24, 2024

• maldipickrGUI

  Public
  Workflow template to dereplicate and cherry-pick mass spectrometry spectraAn interactive interface to run reproducible workflow to dereplicate and cherry-pick m…

  R

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  GNU General Public License v3.0

  •00 forks in ClavelLab/maldipickrGUI•11 star in ClavelLab/maldipickrGUI•00 issues in ClavelLab/maldipickrGUI•00 pull requests in ClavelLab/maldipickrGUI•Updated Dec 18, 2023Dec 18, 2023

• workshop-biometadata-01

  Public
  TeX

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  Creative Commons Attribution 4.0 International

  •00 forks in ClavelLab/workshop-biometadata-01•00 stars in ClavelLab/workshop-biometadata-01•00 issues in ClavelLab/workshop-biometadata-01•00 pull requests in ClavelLab/workshop-biometadata-01•Updated Nov 27, 2023Nov 27, 2023

• SCD

  Public
  Anaerobic Single Cell Dispensing (SCD) for anaerobic cultivation of bacteria from complex samples

  00 forks in ClavelLab/SCD•00 stars in ClavelLab/SCD•00 issues in ClavelLab/SCD•00 pull requests in ClavelLab/SCD•Updated Nov 28, 2022Nov 28, 2022

• MiMiC

  Public
  Minimal Microbial Consortia creation tools

  R

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  GNU Lesser General Public License v3.0

  •44 forks in ClavelLab/MiMiC•1313 stars in ClavelLab/MiMiC•00 issues in ClavelLab/MiMiC•00 pull requests in ClavelLab/MiMiC•Updated Jan 28, 2022Jan 28, 2022