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Add happy report - #326

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georgiakes merged 3 commits into
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add-happy-report
Sep 29, 2026
Merged

Add happy report#326
georgiakes merged 3 commits into
devfrom
add-happy-report

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@georgiakes

@georgiakes georgiakes commented Sep 28, 2026 •
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/variantbenchmarking branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions

github-actions Bot commented Sep 28, 2026 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 2338776

+| ✅ 304 tests passed       |+
#| ❔   3 tests were ignored |#
#| ❔   1 tests had warnings |#
!| ❗   1 tests had warnings |!
Details

❗ Test warnings:

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: docs/images/nf-core-variantbenchmarking_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-variantbenchmarking_logo_dark.png
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore

❔ Tests fixed:

✅ Tests passed:

Run details

  • nf-core/tools version 4.1.0
  • Run at 2026-09-29 10:29:35

@github-actions

github-actions Bot commented Sep 28, 2026 •
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❌ nf-test failed with latest Nextflow version

Note

Tests with Nextflow's latest version failed but it will not cause a CI workflow failure.
Please check if the failure is expected with newer (edge-)releases of Nextflow or if it needs fixing.

  • ❌ docker | latest-everything | Shard 1/7

See the full run for details.

kubranarci
kubranarci approved these changes Sep 29, 2026
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@kubranarci kubranarci left a comment •
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Looks good to me! Thanks a lot!

This was referenced Sep 29, 2026
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@georgiakes
georgiakes merged commit b0750f9 into dev Sep 29, 2026
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@kubranarci kubranarci kubranarci approved these changes

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@georgiakes @kubranarci