Add image QC and transcript QC subworkflow (ported from nf-xenium-processing dev HEAD) - #210

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an-altosian wants to merge 6 commits into

nf-core:devfrom

an-altosian:feat/qc-from-upstream-dev

Commits on Aug 21, 2026

feat(qc): add image QC and transcript QC from nf-xenium-processing dev HEAD

committed
c775ab5
fix(qc): address reviewer findings and run the QC Python tests in CI

committed
edbec26
fix(qc): make the QC scripts executable and satisfy the quarto versions contract

committed
ba2398e
feat(qc): drop the stain_names parameter, document QC, fix the container env

committed
a5241ec
fix(ci): exempt the QC notebooks from template_strings and fix the test env
an-altosian
committed
01ee28a

Commits on Aug 22, 2026

ci: give nf-test shards more disk for the QC containers
an-altosian
committed
1303d6c