Repository navigation
Use the WEBIN from tester and stop hard-coding project accession during testing - #112
Conversation
This PR is against the
|
|
❌ nf-test failed with latest Nextflow versionNote Tests with Nextflow's latest version failed but it will not cause a CI workflow failure.
See the full run for details. |
ochkalova
left a comment
There was a problem hiding this comment.
Thanks a lot Ann, once you decided to do all of them instead of just assembly with complete_metadata tests with and without fixed study, could you please also do the same renaming for mag test with complete_metadata
mag tests should also be done with and without fixed study
| "REGISTERSTUDY": { | ||
| "mgnify-pipelines-toolkit": "1.5.1" | ||
| }, |
There was a problem hiding this comment.
It shouldn't be there. That a bug described in #113
I'll fix it later, in the different branch
| "multiqc/multiqc_plots", | ||
| "multiqc/multiqc_plots/pdf", | ||
| "multiqc/multiqc_plots/pdf/Genomes assigned accessions.pdf", | ||
| "multiqc/multiqc_plots/pdf/genome_metadata.pdf", | ||
| "multiqc/multiqc_plots/pdf/sample_registration.pdf", | ||
| "multiqc/multiqc_plots/png", | ||
| "multiqc/multiqc_plots/png/Genomes assigned accessions.png", | ||
| "multiqc/multiqc_plots/png/genome_metadata.png", | ||
| "multiqc/multiqc_plots/png/sample_registration.png", | ||
| "multiqc/multiqc_plots/svg", | ||
| "multiqc/multiqc_plots/svg/Genomes assigned accessions.svg", | ||
| "multiqc/multiqc_plots/svg/genome_metadata.svg", | ||
| "multiqc/multiqc_plots/svg/sample_registration.svg", |
There was a problem hiding this comment.
Those files are sopposed to be produced, I'll check it
| "REGISTERSTUDY": { | ||
| "mgnify-pipelines-toolkit": "1.5.1" | ||
| }, |
There was a problem hiding this comment.
It shouldn't be there. That a bug described in #113
I'll fix it later, in the different branch
4ce0cc5
into
nf-core:tests/any-credentials
Closes #95
PR checklist
nf-core pipelines lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).