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updated envofams links to new paths #113

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Merged
vagkaratzas merged 2 commits into from
Sep 22, 2026
Merged

updated envofams links to new paths #113

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379a1bf
updated envofams links to new paths
vagkaratzas Sep 22, 2026
e4ca04c
schema updated
vagkaratzas Sep 22, 2026
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4 changes: 2 additions & 2 deletions nextflow.config
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Original file line number Diff line number Diff line change
Expand Up @@ -27,10 +27,10 @@ params {
funfam_latest_link = "https://download.cathdb.info/cath/releases/all-releases/v4_3_0/sequence-data/funfam-hmm3-v4_3_0.lib.gz"
skip_nmpfams = false
nmpfams_db = null
nmpfams_latest_link = "https://pavlopoulos-lab.org/envofams/databases/hmmer/nmpfamsdb.hmm.gz"
nmpfams_latest_link = "https://envofams.org/envofams/databases/hmmer/nmpfamsdb.hmm.gz"
skip_metagroot = false
metagroot_db = null
metagroot_latest_link = "https://pavlopoulos-lab.org/envofams/databases/hmmer/metagroot.hmm.gz"
metagroot_latest_link = "https://envofams.org/envofams/databases/hmmer/metagroot.hmm.gz"
hmmsearch_evalue_cutoff = 0.001

// Functional annotation
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4 changes: 2 additions & 2 deletions nextflow_schema.json
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Expand Up @@ -285,7 +285,7 @@
},
"nmpfams_latest_link": {
"type": "string",
"default": "https://pavlopoulos-lab.org/envofams/databases/hmmer/nmpfamsdb.hmm.gz",
"default": "https://envofams.org/envofams/databases/hmmer/nmpfamsdb.hmm.gz",
"description": "NMPFams hosted link to the latest NMPFams HMM database file."
},
"skip_metagroot": {
Expand All @@ -302,7 +302,7 @@
},
"metagroot_latest_link": {
"type": "string",
"default": "https://pavlopoulos-lab.org/envofams/databases/hmmer/metagroot.hmm.gz",
"default": "https://envofams.org/envofams/databases/hmmer/metagroot.hmm.gz",
"description": "metagRoot hosted link to the latest available metagRoot HMM database file."
},
"hmmsearch_evalue_cutoff": {
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