Issues

• --database argument seemingly not working

  miRTop/mirtop#90 · Filter by author nschcolnicov opened on Oct 2, 2024
  2

• Repeated isomiRs in the mirtop.tsv output

  miRTop/mirtop#80 · Filter by author bounlu opened on Apr 30, 2024
  1

• BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, please consider using Bio.Align.PairwiseAligner

  miRTop/mirtop#79 · Filter by author bounlu opened on Oct 13, 2023
  1

• Pandas update breaks mirtop stats

  miRTop/mirtop#78 · Filter by author jonahcullen opened on Apr 25, 2023

• gff from sRNAbench output - invalid literal error

  miRTop/mirtop#77 · Filter by author jonahcullen opened on Apr 11, 2023
  4

• Compatible tool - Genozip (compression)

  miRTop/mirtop#76 · Filter by author divonlan opened on Jan 19, 2023

• please consider using a contemporary test engine

  miRTop/mirtop#75 · Filter by author emollier opened on Dec 2, 2022

• MirTop output changes depending on sample quality

  miRTop/mirtop#74 · Filter by author apeltzer opened on Oct 11, 2022
  2

• mislabeled isomiR

  miRTop/mirtop#73 · Filter by author abartlett004 opened on Apr 22, 2022

• wrong addition variants

  miRTop/mirtop#69 · Filter by author lpantano opened on Nov 4, 2021

• How to name miRNAs of species not included in miRBase

  miRTop/mirtop#68 · Filter by author zhaosq2022 opened on Oct 19, 2020

• Empty from sRNAbench output (genome mapped output)

  miRTop/mirtop#66 · Filter by author kicheolkim opened on Apr 17, 2020
  4

• mirtop stats generates empty txt file

  bug
  miRTop/mirtop#61 · Filter by author leontienvdbent opened on Oct 10, 2019
  5

• parsing from sRNAbench data (II)

  bug
  miRTop/mirtop#60 · Filter by author JFsanchezherrero opened on Sep 30, 2019
  3

  

• How can I get files like tagMir-all.gff?

  miRTop/mirtop#57 · Filter by author illumination-k opened on Sep 5, 2019
  1

• Support sqlite database

  enhancementinternal
  miRTop/mirtop#56 · Filter by author lpantano opened on Aug 22, 2019
  

• parsing from sRNAbench data

  miRTop/mirtop#53 · Filter by author lsumoy opened on Feb 19, 2019
  10

• integrate mirtop into #galaxy

  enhancementgood first issuehelp wanted
  miRTop/mirtop#40 · Filter by author lpantano opened on Jun 30, 2018

• build docker automatically after a version is successfully finished.

  enhancementhelp wanted
  miRTop/mirtop#39 · Filter by author lpantano opened on Jun 30, 2018

• help with the header of sRNAbench

  good first issue
  miRTop/mirtop#38 · Filter by author lpantano opened on Jun 29, 2018

• Find bugs or unclear man pages in docs

  good first issuehelp wanted
  miRTop/mirtop#37 · Filter by author lpantano opened on Jun 29, 2018

• cross GFF with SNP information

  enhancementhelp wantedinternal
  miRTop/mirtop#35 · Filter by author lpantano opened on Apr 18, 2018

• Add stats output to multiqc

  enhancementgood first issuehelp wanted
  miRTop/mirtop#33 · Filter by author lpantano opened on Mar 26, 2018 · v0.3.0
  1

• Conda install broken; cannot find python modules

  miRTop/mirtop#27 · Filter by author lsmainzer opened on Jan 19, 2018
  3

• Function to parse queries and apply to the GFF file

  good first issuehelp wantedinternal
  miRTop/mirtop#23 · Filter by author lpantano opened on Jan 19, 2018 · v0.3.0