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Running cell pack to open recipe locally #468

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@builab

Hi, I am trying to run this locally instead of the remote server. Does the program support it?

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  1. rugeli commented on May 28, 2026

    @rugeli
    Collaborator

    @builab Hi! Yes, cellPACK fully supports running locally. Quick start steps are documented in the README Let us know if you run into any issues!

  2. builab commented on May 29, 2026

    @builab
    Author

    Thanks. I was able to do it locally. And view it online in the simularit. I want to change the recipe a bit to display a pdb instead of a sphere. So is the Schema v2 here same as cellpack (original) or CellPackGPU? None of the example recipes have a pdb display.

  3. meganrm commented on Jun 3, 2026

    @meganrm
    Member

    Yes you can use PDBS, it's part of the representation object, https://github.com/mesoscope/cellpack/blob/main/cellpack/autopack/interface_objects/representations.py#L91. We're going to upload an example v2 recipe with pdbs so it's clear how to implement this.

  4. builab commented on Jun 3, 2026

    @builab
    Author

    Thanks. I am looking forward to the example. I tried without and did not work. Perhaps I did not do it correctly.

  5. rugeli commented on Jun 4, 2026

    @rugeli
    Collaborator

    Thanks. I am looking forward to the example. I tried without and did not work. Perhaps I did not do it correctly.

    @builab Hi, the example has been merged into main, merged pr for your reference. Thanks!

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