Issues

• Similar number of scaffolds to contigs

  marbl/SALSA#182 · Filter by author dgs108 opened on Jul 17, 2024
  2

• Output scaffolds_FINAL.fasta is binary

  marbl/SALSA#174 · Filter by author mkyriak opened on Aug 15, 2023

• Generate <*.hic> file using a parallel option?

  marbl/SALSA#173 · Filter by author cement-head opened on Jun 20, 2023
  1

• Assembly does not improve

  marbl/SALSA#172 · Filter by author gubrins opened on Mar 7, 2023
  3

• Salsa stopping iterating a bit too soon ?

  marbl/SALSA#169 · Filter by author vpymerel opened on Sep 14, 2022

• correct_links: Aborted

  marbl/SALSA#165 · Filter by author guo-cheng opened on Jul 11, 2022
  1

• Why do I still get misassembles thought salsa didn't find any?

  marbl/SALSA#156 · Filter by author zmz1988 opened on Jan 17, 2022
  1

• convert.sh does not produce a .hic file in the appropriate format for juicebox

  marbl/SALSA#154 · Filter by author oneillkza opened on Nov 24, 2021
  7

• Would it be possible to get convert.sh and its dependencies included in the conda environment/container?

  marbl/SALSA#153 · Filter by author oneillkza opened on Nov 22, 2021

• Grouping scaffolds into chromosomes

  marbl/SALSA#152 · Filter by author kkrizanovic opened on Oct 22, 2021
  1

• Number of iterations different than stated

  marbl/SALSA#151 · Filter by author CIWa opened on Oct 5, 2021
  3

• marking duplicates

  marbl/SALSA#146 · Filter by author olechnwin opened on Aug 19, 2021
  1

• Generating .hic file with convert.sh

  marbl/SALSA#138 · Filter by author kishor2019 opened on Apr 26, 2021
  4

• Still runs with empty bed

  marbl/SALSA#137 · Filter by author aakashsur opened on Apr 21, 2021

• Forcing merge of scaffolds

  marbl/SALSA#129 · Filter by author chopra29 opened on Feb 15, 2021
  1

• Post processing steps after SALSA

  marbl/SALSA#128 · Filter by author pubudumanoj opened on Feb 8, 2021
  1

• Does SALSA use supplemental Hi-C alignments?

  marbl/SALSA#123 · Filter by author Adamtaranto opened on Dec 11, 2020

• iterations stop after 8

  marbl/SALSA#121 · Filter by author gf777 opened on Dec 9, 2020

• Bad result because low quality Hi-C library?

  marbl/SALSA#119 · Filter by author ptranvan opened on Nov 15, 2020
  1

• Link data not exhausted. fixable inversion and unlinked scaffolds

  marbl/SALSA#111 · Filter by author talioto opened on Oct 7, 2020
  1

• empty alignments_sorted.txt file while generating .hic file

  marbl/SALSA#110 · Filter by author gitcruz opened on Sep 28, 2020
  3

• No chr-level scaffolding

  marbl/SALSA#107 · Filter by author HeQSun opened on Aug 5, 2020

• the halting problem, NG50 compared with a few other metrics

  marbl/SALSA#104 · Filter by author jbh-cas opened on May 10, 2020