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Implement GEFF v1 spec compatibility - #5

Merged

ksugar merged 27 commits into

mainfrom

v1-spec-compat-impl

Jun 23, 2026

Merged

Implement GEFF v1 spec compatibility#5
ksugar merged 27 commits into
mainfrom
v1-spec-compat-impl

Commits on Dec 4, 2025
- Initial implementation of round trip testing between Java and Python
  cmalinmayor
  committed
  24c79f0
- Add note on how to run tests in readme
  cmalinmayor
  committed
  ad440c5
Commits on Apr 10, 2026
- Update logback version to handle CVE warnings
  ksugar
  committed
  55b3891
- v1 spec compatibility implementation
  ksugar
  committed
  034d7d8
- Update v1 spec compatibility analysis and plan
  ksugar
  committed
  ca37ef5
- Implement Variable-length Property
  ksugar
  committed
  d1345ea
- update v1 spec compatibility plan for writing varlen props
  ksugar
  committed
  46c30c0
- Implement VarlengthPropertyWriting
  ksugar
  committed
  e515270
Commits on May 8, 2026
- Fallback to RawCompression if Blosc compression is not available
  ksugar
  committed
  8f1512d
- Add uv-related files for testing
  ksugar
  committed
  109beff
- Refactoring
  ksugar
  committed
  26c4f23
- Fix five bugs found during code review
  ksugar
  committed
  3ff6e48
- Fix covariance2d/3d not restored on read, add roundtrip tests
  ksugar
  committed
  8600fef
- Add covariance2d/3d cross-language round-trip test
  ksugar
  committed
  b21271e
- Unify Java indentation to tabs (1 tab per indent level)
  ksugar
  committed
  adb210d
- Fix zarr output to pass is_geff_dataset validation
  
  ksugar
  and
  claude
  committed
  563a911
- Populate props metadata when writeAllProps=true to pass Python validation
  ksugar
  committed
  91ad337
- Write zarr arrays in little-endian byte order for Python/pandas compatibility
  
  ksugar
  and
  claude
  committed
  f9cb478
- Fix byte-order patch for blosc-compressed Zarr arrays
  
  ksugar
  and
  claude
  committed
  f2a0cc8
Commits on Jun 19, 2026
- Automatically calculate the chunk size
  ksugar
  committed
  cf811bc
- Update docs
  ksugar
  committed
  82faad8
- Update README
  ksugar
  committed
  995a53a
- Update CITATION.cff
  ksugar
  committed
  0eef18d
- Refactoring
  ksugar
  committed
  0f3366b
Commits on Jun 22, 2026
- Update polygon handling to follow the v1 spec
  ksugar
  committed
  77dc5a9
- Add supported Zarr format
  ksugar
  committed
  11a3d23
- Add methods for custom props and varlenProps
  ksugar
  committed
  d02d64c

Commits

Commits on Dec 4, 2025

Commits on Apr 10, 2026

Commits on May 8, 2026

Commits on Jun 19, 2026

Commits on Jun 22, 2026