Repository navigation

Update to local dev to use latest changes on nf-core dev - #1

Open

drpatelh wants to merge 378 commits into

ktrns:devfrom

nf-core:dev

Open

Update to local dev to use latest changes on nf-core dev#1
drpatelh wants to merge 378 commits into
ktrns:devfrom
nf-core:dev

This pull request is big! We're only showing the most recent 250 commits

Commits on Mar 20, 2024
- Remove local leak
  JoseEspinosa
  committed
  5932ff2
- Bring back logic for making gene bed from supplied --gtf
  JoseEspinosa
  committed
  1a5f178
Commits on Mar 21, 2024
- fix spaces
  bjlang
  authored
  39cfeb6
Commits on Mar 22, 2024
- Make lint happy
  JoseEspinosa
  committed
  367a550
Commits on Apr 2, 2024
- Address review comments
  JoseEspinosa
  committed
  eb1285a
- Merge pull request #357 from JoseEspinosa/updates
  JoseEspinosa
  authored
  36227a2
Commits on Apr 3, 2024
- Merge branch 'TEMPLATE' of https://github.com/nf-core/atacseq into merge-template-2.13.1
  JoseEspinosa
  committed
  80b4c22
- Update changelog
  JoseEspinosa
  committed
  d3f03de
- Fix merge error
  JoseEspinosa
  committed
  1436193
- Remove dumpsoftwareversios vestiges
  JoseEspinosa
  committed
  4af724a
Commits on Apr 4, 2024
- fix multiqc config
  JoseEspinosa
  committed
  657df91
- Update modules and subworkflows
  JoseEspinosa
  committed
  931a1e2
Commits on Apr 5, 2024
- Make prettier happy
  JoseEspinosa
  committed
  01d6f2c
- fix path to fasta file for samtools sort in bam_filter_bamtools
  JoseEspinosa
  committed
  029e29d
- Update bowtie/align module
  JoseEspinosa
  committed
  af234f3
Commits on Apr 11, 2024
- Merge pull request #360 from JoseEspinosa/merge-template-2.13.1
  bjlang
  authored
  76ee846
Commits on Apr 12, 2024
- Merge pull request #358 from VErconi/WipClarificationUsage
  JoseEspinosa
  authored
  9fbc9b0
- Synchronize example samplesheets with the usage.md
  
  Björn
  authored and
  Björn
  committed
  5a3215f
Commits on May 8, 2024
- Template update for nf-core/tools version 2.14.0
  nf-core-bot
  committed
  4fcb660
Commits on May 9, 2024
- Template update for nf-core/tools version 2.14.1
  nf-core-bot
  committed
  296d552
Commits on Jun 10, 2024
- Synchronize README.md with usage.md
  bjlang
  authored
  e69f5dc
Commits on Jun 25, 2024
- Merge branch 'TEMPLATE' of https://github.com/nf-core/atacseq into merge-template-v2.13.1
  JoseEspinosa
  committed
  6be9408
- Update fastqc hash
  JoseEspinosa
  committed
  b89f879
- Update .editorconfig
  
  JoseEspinosa
  and
  mashehu
  authored
  35f81ab
- Merge pull request #366 from JoseEspinosa/merge-template-v2.13.1
  JoseEspinosa
  authored
  7924ff7
- Merge pull request #362 from bjlang/dev
  JoseEspinosa
  authored
  510563e
Commits on Jul 1, 2024
- Fix save_unaligned parameter description in schema
  JoseEspinosa
  committed
  a876ca1
Commits on Jul 2, 2024
- Merge pull request #368 from JoseEspinosa/fixes
  maxulysse
  authored
  641228c
Commits on Jul 3, 2024
- Use bash sort instead of bedtools sort (more memory efficient)
  JoseEspinosa
  committed
  fff0394
- Increase memory for BEDTOOLS_GENOMECOV for merge duplicates
  JoseEspinosa
  committed
  31ca117
- Merge remote-tracking branch 'upstream/dev' into fixes
  JoseEspinosa
  committed
  bd6270a
- Update changelog
  JoseEspinosa
  committed
  3123088
- Move memory requirements to base.config as requested in review
  JoseEspinosa
  committed
  020cbec
- Add --skip_merged_replicate_bigwig parameter
  JoseEspinosa
  committed
  e53da35
- Merge pull request #369 from JoseEspinosa/fixes
  JoseEspinosa
  authored
  0623e2e
Commits on Jul 4, 2024
- Check for sample names allowed characters and report line number when erroring
  JoseEspinosa
  committed
  51b2f96
- Update changelog
  JoseEspinosa
  committed
  90a440a
- Make linting happy
  JoseEspinosa
  committed
  50f1b0d
- Merge pull request #371 from JoseEspinosa/fixes
  JoseEspinosa
  authored
  a238997
Commits on Jul 5, 2024
- Update bedtools_genomecov image to use gnu sort
  JoseEspinosa
  committed
  81d5eca
- Update sort command adding buffer size and parallel processing
  JoseEspinosa
  committed
  4a4227c
- rm tmp file
  JoseEspinosa
  committed
  57db5ef
- make lint happy
  JoseEspinosa
  committed
  dbab390
Commits on Jul 8, 2024
- Merge pull request #374 from JoseEspinosa/fixes
  JoseEspinosa
  authored
  30a165a
Commits on Jul 12, 2024
- Revert "Revert "DO NOT MERGE yet: Discuss fixes of #164 #168 #169 ""
  lpantano
  committed
  7d31e7f
Commits on Jul 15, 2024
- get working shift and make it false by default
  lpantano
  committed
  36a67a0
- integrated dev changes
  lpantano
  committed
  cc5ca5d
- remove bam to bed
  lpantano
  committed
  e6d9190
- fix editorial
  lpantano
  committed
  bb2d9fb
- fix default of shift param
  lpantano
  committed
  6dea6cd
- update changelog
  lpantano
  committed
  b1fb091
Commits on Sep 19, 2024
- Change to macs3 instead of macs2
  JoseEspinosa
  committed
  a67450d
- Update changelog
  JoseEspinosa
  committed
  caef300
- Merge remote-tracking branch 'upstream/dev' into updates
  JoseEspinosa
  committed
  03b5f51
- Change all instances of macs2 by macs3
  JoseEspinosa
  committed
  2038e7d
- One more
  JoseEspinosa
  committed
  c9e4c12
- Make lint happy
  JoseEspinosa
  committed
  8d55feb
- Update subwworkflow name
  JoseEspinosa
  committed
  d3d7faa
- Merge pull request #379 from JoseEspinosa/updates
  JoseEspinosa
  authored
  fe950ac
- Update CHANGELOG.md
  
  lpantano
  and
  apeltzer
  authored
  58be205
Commits on Sep 25, 2024
- Update nextflow_schema.json
  
  lpantano
  and
  JoseEspinosa
  authored
  c57f303
- Update subworkflows/local/bam_shift_reads.nf
  
  lpantano
  and
  JoseEspinosa
  authored
  25055dd
- Update nextflow_schema.json
  
  lpantano
  and
  JoseEspinosa
  authored
  c32f71e
- Update workflows/atacseq.nf
  
  lpantano
  and
  JoseEspinosa
  authored
  fda14bd
- Update workflows/atacseq.nf
  
  lpantano
  and
  JoseEspinosa
  authored
  50afafb
- Update workflows/atacseq.nf
  
  lpantano
  and
  JoseEspinosa
  authored
  f3ff187
- Update format include workflows/atacseq.nf
  
  lpantano
  and
  JoseEspinosa
  authored
  f11e231
- Update channel format workflows/atacseq.nf
  
  lpantano
  and
  JoseEspinosa
  authored
  347d98e
Commits on Sep 26, 2024
- Merge pull request #375 from nf-core/PR_301
  JoseEspinosa
  authored
  ea927b5
Commits on Sep 27, 2024
- Install deeptools/alignmentsieve and get rid of the local module
  JoseEspinosa
  committed
  b940bfe
- Only shift reads with chromap when `shift_read` param set
  JoseEspinosa
  committed
  f7e31e9
- Update changelog
  JoseEspinosa
  committed
  ce4b647
- Update changelog
  JoseEspinosa
  committed
  e060f4a
Commits on Oct 8, 2024
- Template update for nf-core/tools version 3.0.0
  nf-core-bot
  committed
  a5850d9
Commits on Oct 9, 2024
- Template update for nf-core/tools version 3.0.1
  nf-core-bot
  committed
  c856323
Commits on Oct 10, 2024
- Merge branch 'TEMPLATE' of https://github.com/nf-core/atacseq into merging-template-3.0.1
  JoseEspinosa
  committed
  26dbb3b
Commits on Oct 11, 2024
- Merge pull request #382 from JoseEspinosa/fixes
  JoseEspinosa
  authored
  ed7a5cf
- Fix typo
  JoseEspinosa
  committed
  c4e2180
- Merge remote-tracking branch 'upstream/dev' into merging-template-3.0.1
  JoseEspinosa
  committed
  f2c11f4
- Make lint happy
  JoseEspinosa
  committed
  827b9ad
- Fix fastqc git_sha
  JoseEspinosa
  committed
  9a5bb61
- Template update for nf-core/tools version 3.0.2
  nf-core-bot
  committed
  71d95a7
- Merge remote-tracking branch 'upstream/nf-core-template-merge-3.0.2' into merging-template-3.0.1
  JoseEspinosa
  committed
  503af9b
Commits on Oct 14, 2024
- Remove check_max
  JoseEspinosa
  committed
  38053e4
- Fix deseq module
  JoseEspinosa
  committed
  51333fc
- Merge pull request #386 from JoseEspinosa/merging-template-3.0.1
  JoseEspinosa
  authored
  d0a17a9
Commits on Nov 20, 2024
- Prevent pipeline fails from erroneous param validation of fasta and gtf parameters if iGenomes are used
  bjlang
  committed
  75378f5
- Merge pull request #392 from bjlang/dev
  bjlang
  authored
  2717572
Commits on Dec 12, 2024
- Template update for nf-core/tools version 3.1.0
  nf-core-bot
  committed
  4b8f451
Commits on Dec 20, 2024
- Template update for nf-core/tools version 3.1.1
  nf-core-bot
  committed
  657aab5
Commits on Jan 9, 2025
- implement min_max_fragL_filter
  lijin0303
  committed
  4aebe8d
Commits on Jan 10, 2025
- Merge branch 'TEMPLATE' of https://github.com/nf-core/atacseq into merging-template-3.1.1
  JoseEspinosa
  committed
  102b897
- Update changelog
  JoseEspinosa
  committed
  cce3175
- Make lint happy
  JoseEspinosa
  committed
  957139d
- Merge pull request #399 from JoseEspinosa/merging-template-3.1.1
  JoseEspinosa
  authored
  62d86f8
Commits on Jan 14, 2025
- documentation updated for usage
  lijin0303
  committed
  846b5e7
Commits on Jan 15, 2025
- update documentation for different frag size selection
  lijin0303
  committed
  9292899
Commits on Jan 20, 2025
- Template update for nf-core/tools version 3.1.2
  nf-core-bot
  committed
  40ce42a
Commits on Jan 24, 2025
- add default to nextflow.config under Options: Alignment
  lijin0303
  committed
  5c38e50
Commits on Jan 27, 2025
- Template update for nf-core/tools version 3.2.0
  nf-core-bot
  committed
  1e8ce71
Commits on Jan 30, 2025
- up to date with lintr
  lijin0303
  committed
  e494dc2
- Merge branch 'dev' into ruitong_dev
  lpantano
  authored
  7c1baaf
Commits on Feb 4, 2025
- [automated] Fix linting with Prettier
  nf-core-bot
  committed
  ca44cfb
Commits on Feb 12, 2025
- Merge branch 'dev' into nf-core-template-merge-3.2.0
  lpantano
  committed
  7b392cf
- Merge pull request #409 from nf-core/nf-core-template-merge-3.2.0
  lpantano
  authored
  9e6d8e4
- Merge branch 'dev' into pr/407
  lpantano
  committed
  f1ad084
- Merge pull request #407 from lijin0303/ruitong_dev
  lpantano
  authored
  9b89152
Commits on Feb 20, 2025
- better place for docs
  lpantano
  committed
  422883f
- update changes
  lpantano
  committed
  c865a3f
- make params visible
  lpantano
  committed
  67636b3
- Merge pull request #412 from nf-core/fix_shift_docs
  lpantano
  authored
  a8da7c4
Commits on Apr 30, 2025
- Template update for nf-core/tools version 3.2.1
  nf-core-bot
  committed
  d1922fa
Commits on May 7, 2025
- Merge branch 'TEMPLATE' of https://github.com/nf-core/atacseq into merging-template-3.2.1
  JoseEspinosa
  committed
  129465d
Commits on May 9, 2025
- Apply suggestion from review
  JoseEspinosa
  committed
  54b2741
- Fix ci
  JoseEspinosa
  committed
  1f8bdf6
- Merge pull request #420 from JoseEspinosa/merging-template-3.2.1
  JoseEspinosa
  authored
  5960178
Commits on Jun 3, 2025
- Template update for nf-core/tools version 3.3.1
  nf-core-bot
  committed
  43842a6
Commits on Jul 8, 2025
- Template update for nf-core/tools version 3.3.2
  nf-core-bot
  committed
  ca3c590
Commits on Sep 22, 2025
- Merge branch 'TEMPLATE' of https://github.com/nf-core/atacseq into merging-template-3.2.1
  JoseEspinosa
  committed
  89558b8
- Update ro-crate to make linting happy
  JoseEspinosa
  committed
  0aec933
- Make lint happy
  JoseEspinosa
  committed
  4fce7b1
Commits on Sep 25, 2025
- Adding tests on ci again
  JoseEspinosa
  committed
  f9fa79b
- Skip nf-tests
  JoseEspinosa
  committed
  7582d52
- Merge branch 'merging-template-3.2.1' of https://github.com/joseespinosa/nf-core-atacseq into merging-template-3.2.1
  JoseEspinosa
  committed
  d78ec48
- Make lint happy
  JoseEspinosa
  committed
  ff18f31
- Move skip nf-test to the correct section
  JoseEspinosa
  committed
  3f9901a
- Merge branch 'merging-template-3.2.1' of https://github.com/joseespinosa/nf-core-atacseq into merging-template-3.2.1
  JoseEspinosa
  committed
  56584aa
- Fix path to .ci.yml
  JoseEspinosa
  committed
  ea71b24
- Getting rid of all nf-test stuff
  JoseEspinosa
  committed
  285c111
- Update nxf version on ci
  JoseEspinosa
  committed
  6e85b66
- Make lint happy
  JoseEspinosa
  committed
  a3a8e16
- Bump nextflow version in ci
  JoseEspinosa
  committed
  8f2b984
- Merge branch 'merging-template-3.2.1' of https://github.com/joseespinosa/nf-core-atacseq into merging-template-3.2.1
  JoseEspinosa
  committed
  9bd0dc9
Commits on Oct 16, 2025
- Template update for nf-core/tools version 3.4.1
  nf-core-bot
  committed
  e69e88e
Commits on Oct 22, 2025
- Update nextflow.config
  
  JoseEspinosa
  and
  mirpedrol
  authored
  051c635
- Update README.md
  
  JoseEspinosa
  and
  mirpedrol
  authored
  d8793e0
- Make lint happy
  JoseEspinosa
  committed
  84dc909
Commits on Oct 23, 2025
- Merge pull request #425 from JoseEspinosa/merging-template-3.2.1
  JoseEspinosa
  authored
  82940a2
Commits on Oct 28, 2025
- Merge branch 'TEMPLATE' of https://github.com/nf-core/atacseq into merge-template-v3.4.1
  JoseEspinosa
  committed
  63bf9a4
- Make lint happy
  JoseEspinosa
  committed
  14d591b
- Fix template tyop
  JoseEspinosa
  committed
  9a41bf9
- Update test nxf version
  JoseEspinosa
  committed
  7380e14
- Merge pull request #428 from JoseEspinosa/merge-template-v3.4.1
  JoseEspinosa
  authored
  a4d0886
Commits on Oct 29, 2025
- Add stub runs to local modules
  JoseEspinosa
  committed
  990d8a1
- First iteration towards nf-test implementation
  JoseEspinosa
  committed
  eb836a7
- Adding get-shards action
  JoseEspinosa
  committed
  ecc97a5
- Update snapshots
  JoseEspinosa
  committed
  dfeab47
- Make lint happy
  JoseEspinosa
  committed
  184f229
- More linting
  JoseEspinosa
  committed
  229be26
- Merge branch 'nf-test' of https://github.com/joseespinosa/nf-core-atacseq into nf-test
  JoseEspinosa
  committed
  2b030fb
- Bump minimal nxf version for nf-test
  JoseEspinosa
  committed
  dde40dd
- Add nf-test action and remove nf-test related files from "file_exist"
  JoseEspinosa
  committed
  39bed01
- Update changelog
  JoseEspinosa
  committed
  2ec5b5f
Commits on Oct 30, 2025
- Exclude variable files from md5sum checks
  JoseEspinosa
  committed
  5cac83c
- Update nf-test snapshot
  JoseEspinosa
  committed
  df23680
- Update snapshot
  JoseEspinosa
  committed
  eee5855
- Correctly update snapshot
  JoseEspinosa
  committed
  089be5c
- Merge pull request #429 from JoseEspinosa/nf-test
  JoseEspinosa
  authored
  4d8fbd3
Commits on Oct 31, 2025
- Update deeptools/plotfingerprint
  JoseEspinosa
  committed
  4f14bef
- Update deeptools/computematrix
  JoseEspinosa
  committed
  3330302
- Update deeptools/plotprofile
  JoseEspinosa
  committed
  b7f2de7
- Update deeptools/plotheatmap module
  JoseEspinosa
  committed
  de0fceb
Commits on Nov 3, 2025
- Update picard/mergesamfiles
  JoseEspinosa
  committed
  491762c
- Add bowtie2 nf-tests
  JoseEspinosa
  committed
  659af2d
- Add chromap nf-tests
  JoseEspinosa
  committed
  1e398f4
- Add star nf-tests
  JoseEspinosa
  committed
  10ae84e
- Add skip-consensus nf-tests
  JoseEspinosa
  committed
  c8d0134
- Add skip-trimming nf-tests
  JoseEspinosa
  committed
  ad8390c
- Update default nf-test snapshots
  JoseEspinosa
  committed
  101ed98
- Update bowtie2 snapshots
  JoseEspinosa
  committed
  a085887
Commits on Nov 4, 2025
- Update nf.test declarations (test will fail but need to sychronize)
  JoseEspinosa
  committed
  b9b135c
- Update link reference in output documentation
  mashehu
  authored
  4e323c9
- Update snapshots
  JoseEspinosa
  committed
  c45f78b
Commits on Nov 5, 2025
- Update star snapshots
  JoseEspinosa
  committed
  93bcc94
- Remove variable files from all snapshots
  JoseEspinosa
  committed
  1a948b5
Commits on Nov 6, 2025
- Update snapshots
  JoseEspinosa
  committed
  c2e6675
Commits on Nov 7, 2025
- Merge pull request #432 from nf-core/mashehu-patch-1
  JoseEspinosa
  authored
  11f1371
Commits on Nov 10, 2025
- Add controls test to nf-test
  JoseEspinosa
  committed
  5375ea6
- Merge pull request #430 from JoseEspinosa/nf-test
  JoseEspinosa
  authored
  9307b54
Commits on Nov 20, 2025
- Template update for nf-core/tools version 3.5.1
  nf-core-bot
  committed
  3612ee8
- Merge branch 'TEMPLATE' of https://github.com/nf-core/atacseq into merge-template-3.5.1
  JoseEspinosa
  committed
  e8d9019
- Fix .nf-core.yml
  JoseEspinosa
  committed
  290ffde
- Recover files removed by mistake
  JoseEspinosa
  committed
  3e4915e
- Make lint happy
  JoseEspinosa
  committed
  a801ab4
- Fix logos
  JoseEspinosa
  committed
  54f29ef
- Make lint happy
  JoseEspinosa
  committed
  b463db6
- Merge pull request #434 from JoseEspinosa/merge-template-3.5.1
  JoseEspinosa
  authored
  c7b9e7b
Commits on Mar 19, 2026
- Fix strict syntax errors
  bentsherman
  committed
  e19ce3b
- Merge pull request #436 from nf-core/fix-strict-syntax
  JoseEspinosa
  authored
  3ed86ea
Commits on Mar 20, 2026
- Update bwa/align
  JoseEspinosa
  committed
  681748b
- Update fastq_fastqc_umitools_trimgalore
  JoseEspinosa
  committed
  7ae6ba1
- Update changelog
  JoseEspinosa
  committed
  66aec19
- Make lint hapyy
  JoseEspinosa
  committed
  63a9760
Commits on Mar 23, 2026
- Update snapshots
  JoseEspinosa
  committed
  83cc151
- Update test and snapshots
  JoseEspinosa
  committed
  9410f7a
- Update rest of snapshots using bwa
  JoseEspinosa
  committed
  a337aa5
Commits on Mar 24, 2026
- Merge pull request #437 from JoseEspinosa/updates
  JoseEspinosa
  authored
  0a5dea1
Commits on Mar 25, 2026
- Add checkIfExists for all file invocations
  JoseEspinosa
  committed
  1e48c3e
- Prevent S3 access errors
  JoseEspinosa
  committed
  5976ac4
- Update changelog
  JoseEspinosa
  committed
  02e0147
- Fix changelog
  JoseEspinosa
  committed
  8418731
Commits on Mar 26, 2026
- Make ch_bowtie2_index consistent with the rest of indexes
  JoseEspinosa
  committed
  7a96635
Commits on Mar 30, 2026
- Revert channel to Channel (leave for a follow-up PR where minimal nxf version is also updated)
  JoseEspinosa
  committed
  e251826
Commits on Apr 20, 2026
- Merge pull request #439 from nf-core/s3_index_validation
  JoseEspinosa
  authored
  800e634
Commits on Apr 28, 2026
- Template update for nf-core/tools version 4.0.0
  nf-core-bot
  committed
  55b4d48
Commits on Apr 30, 2026
- Template update for nf-core/tools version 4.0.2
  nf-core-bot
  committed
  1bbdeeb
Commits on May 19, 2026
- Merge branch 'TEMPLATE' of https://github.com/nf-core/atacseq into merging-template-4.0.2
  JoseEspinosa
  committed
  f774e3c
- Update changelog
  JoseEspinosa
  committed
  fac245e
- Increase size for nf-test runners
  JoseEspinosa
  committed
  eceef67
- Merge branch 'dev' into merging-template-4.0.2
  JoseEspinosa
  authored
  dc6af4e
- Add .gitignore to files_unchaged
  JoseEspinosa
  committed
  66b636c
- Make lint happy
  JoseEspinosa
  committed
  145229e
Commits on May 20, 2026
- Update fastqc
  JoseEspinosa
  committed
  1e8e8a4
- Update containers configs
  JoseEspinosa
  committed
  9c86059
- Update snapshots
  JoseEspinosa
  committed
  51436ab
- Update star nf-test snapshots
  JoseEspinosa
  committed
  07dfdce
- Merge pull request #443 from JoseEspinosa/merging-template-4.0.2
  JoseEspinosa
  authored
  487128b
Commits on Jun 22, 2026
- Modernize pipeline code for Nextflow strict (v2) syntax
  
  NicoDeVeaux
  and
  Seqera Co-Scientist
  committed
  f621ea9
- Add PR link to CHANGELOG entry
  NicoDeVeaux
  committed
  8fab3b4
- Drop unused dead-store variables instead of prefixing
  NicoDeVeaux
  committed
  6b078c4
- Apply maintainer wording for CHANGELOG entry
  NicoDeVeaux
  committed
  4cd31fe
- Merge pull request #446 from NicoDeVeaux/strict-syntax
  NicoDeVeaux
  authored
  19f44ee
Commits on Jul 24, 2026
- Template update for nf-core/tools version 4.0.3
  nf-core-bot
  committed
  c26ac89
Commits on Jul 29, 2026
- Merge nf-core/tools 4.0.3 template update into dev
  NicoDeVeaux
  committed
  8d24a91
Commits on Aug 20, 2026
- Add CHANGELOG entry for template 4.0.3
  
  NicoDeVeaux
  and
  claude
  committed
  3d024f7
- Merge pull request #453 from NicoDeVeaux/merging-template-4.0.3
  Kevin-Brockers
  authored
  5a4c18b
Commits on Aug 21, 2026
- Sort peak QC plot inputs deterministically
  
  NicoDeVeaux
  and
  claude
  committed
  7a89066
- Add CHANGELOG entry for #454
  
  NicoDeVeaux
  and
  claude
  committed
  f5a1bca
- Sort the plot inputs inside the modules instead of the channel
  
  NicoDeVeaux
  and
  claude
  committed
  b8039eb
Commits on Aug 22, 2026
- Merge pull request #454 from NicoDeVeaux/fix/deterministic-peak-qc-plot-order
  Kevin-Brockers
  authored
  4177ea9
Commits on Sep 11, 2026
- Add manifest.diagram
  ewels
  committed
  446ea80
Commits on Sep 28, 2026
Commits on Sep 29, 2026
- Merge pull request #448 from NicoDeVeaux/nf-core-modules-update
  NicoDeVeaux
  authored
  a51bee0
Commits on Sep 30, 2026
- Merge pull request #457 from nf-core/metro-maps
  Kevin-Brockers
  authored
  6a93077
Commits on Oct 6, 2026
- Run test_controls profile with --with_control in controls test
  
  NicoDeVeaux
  and
  claude
  committed
  6af6bd3
- Update controls test snapshot
  NicoDeVeaux
  committed
  1e0199a
- Use CI featureCounts md5s in controls snapshot
  NicoDeVeaux
  committed
  006f89b
Commits on Oct 7, 2026
- Fill in CI mRp featureCounts md5 in controls snapshot
  
  NicoDeVeaux
  and
  claude
  committed
  5c6e91e
- Use CI deepTools fingerprint md5s in controls snapshot
  
  NicoDeVeaux
  and
  claude
  committed
  dfe4740
Commits on Oct 13, 2026
- Update CHANGELOG.md
  
  NicoDeVeaux
  and
  JoseEspinosa
  authored
  9131e33
- Merge pull request #466 from NicoDeVeaux/fix-test-controls-profile
  NicoDeVeaux
  authored
  73155d2

Commits

Commits on Mar 20, 2024

Commits on Mar 21, 2024

Commits on Mar 22, 2024

Commits on Apr 2, 2024

Commits on Apr 3, 2024

Commits on Apr 4, 2024

Commits on Apr 5, 2024

Commits on Apr 11, 2024

Commits on Apr 12, 2024

Commits on May 8, 2024

Commits on May 9, 2024

Commits on Jun 10, 2024

Commits on Jun 25, 2024

Commits on Jul 1, 2024

Commits on Jul 2, 2024

Commits on Jul 3, 2024

Commits on Jul 4, 2024

Commits on Jul 5, 2024

Commits on Jul 8, 2024

Commits on Jul 12, 2024

Commits on Jul 15, 2024

Commits on Sep 19, 2024

Commits on Sep 25, 2024

Commits on Sep 26, 2024

Commits on Sep 27, 2024

Commits on Oct 8, 2024

Commits on Oct 9, 2024

Commits on Oct 10, 2024

Commits on Oct 11, 2024

Commits on Oct 14, 2024

Commits on Nov 20, 2024

Commits on Dec 12, 2024

Commits on Dec 20, 2024

Commits on Jan 9, 2025

Commits on Jan 10, 2025

Commits on Jan 14, 2025

Commits on Jan 15, 2025

Commits on Jan 20, 2025

Commits on Jan 24, 2025

Commits on Jan 27, 2025

Commits on Jan 30, 2025

Commits on Feb 4, 2025