HIC Data Analysis

Running HIC analysis on Hipergator at UF

Create a folder with the sample name- mkdir WT cd WT mkdir fastq ml juicer/1.6

Command to initiate juicer pipeline

Good references to read-

1. https://pmc.ncbi.nlm.nih.gov/articles/PMC12678833/#Sec8 - Read the technical validation part. They have used the Arima Kit to perform the analysis and their recommended thresholds.