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feat(aws-healthomics): add Nextflow specifics to omicsResourceFallbac… - #205

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nadetastic merged 1 commit into
kirodotdev:mainfrom
saipavanyerra:add-nextflow-resource-fallback
Oct 15, 2026
Merged

nadetastic merged 1 commit into
kirodotdev:mainfrom
saipavanyerra:add-nextflow-resource-fallback

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Extended the resource fallback SOP to cover Nextflow in addition to WDL.

Description of changes:

  • Nextflow-specific syntax differences (Groovy maps, cpus vs cpu, memory format, directive placement)
  • Behavioral differences for validation (warnings in statusMessage instead of rejection), retries
    (ALL_PROFILES_INSTANCE_RESERVATION_FAILED is non-terminal with retry strategy), and task.cpus/task.memory not reflecting the
    active profile
  • A complete Nextflow process example demonstrating GPU-to-CPU fallback with retry configuration
  • Updated existing troubleshooting guidance to note Nextflow's softer validation behavior

…kOrder steering doc

Extended the resource fallback SOP to cover Nextflow in addition to WDL.
Adds Nextflow syntax differences, validation behavior, retry semantics,
process-level directive inheritance, and a complete Nextflow example.
@nadetastic
nadetastic merged commit e974b7b into kirodotdev:main Oct 15, 2026
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2 participants