Issues

• [feat] Add a DataSink to collect all the HTML into one folder in output dir and optionally upload to remove by rclone

  kimpenn/aegle#48 · Filter by author kuang-da opened on Dec 14, 2025

• [feat] Channel-First Storage (C, H, W)?

  kimpenn/aegle#47 · Filter by author kuang-da opened on Dec 14, 2025
  1

• [feat] regionprops_table can be improved by GPUs

  kimpenn/aegle#46 · Filter by author kuang-da opened on Dec 13, 2025

• [infra] Isolate deepcell from the pipeline env

  kimpenn/aegle#45 · Filter by author kuang-da opened on Dec 10, 2025

• [feat] Have a uploading module to extract HTML to remote sink

  kimpenn/aegle#44 · Filter by author kuang-da opened on Dec 9, 2025

• deepcell's watershred might be able to speedup

  kimpenn/aegle#43 · Filter by author kuang-da opened on Nov 24, 2025

• [feat] Add a data integrity check step in the main module

  kimpenn/aegle#42 · Filter by author kuang-da opened on Oct 15, 2025

• [feat] Calculate annulus for each cell to extract information about per-cell background

  kimpenn/aegle#39 · Filter by author kuang-da opened on Oct 10, 2025

• [docs] Add documentation about single-cell analysis module

  kimpenn/aegle#33 · Filter by author kuang-da opened on Oct 7, 2025
  1

• [chore] Improve the documentation and source code for devcontainer

  kimpenn/aegle#32 · Filter by author kuang-da opened on Oct 7, 2025

• [feat] Add async tasks to calculate segmentation evaluation scores.

  kimpenn/aegle#31 · Filter by author kuang-da opened on Oct 4, 2025
  

• [Suggestion] qptifffile backend

  kimpenn/aegle#28 · Filter by author grenkoca opened on Jul 4, 2025
  2

• [Feature] Add cellpose model for segmentation

  kimpenn/aegle#19 · Filter by author kuang-da opened on Apr 9, 2025

• [Feature] Add a module for some scalable segmentation eavluation metrics

  kimpenn/aegle#9 · Filter by author kuang-da opened on Feb 9, 2025