Issues

• Error running spades 4.2.0 and extracting UCE data [Fixed]

  juliema/aTRAM#321 · Filter by author bjzelvelder opened on Jun 26, 2025

• Could you help me figure out what causes the error?

  juliema/aTRAM#320 · Filter by author luckyvivi opened on Aug 6, 2023

• [Question] How to use aTRAM stitcher? (no tutorial available / help menu unclear)

  juliema/aTRAM#317 · Filter by author ClaraKoehne opened on Oct 19, 2022

• Only using one CPU for atram_preprocessor.py

  juliema/aTRAM#316 · Filter by author mchaney1 opened on Sep 26, 2022

• ## How to continue the uncompleted tasks?

  juliema/aTRAM#315 · Filter by author laiqiang0728 opened on Jul 5, 2022
  5

• [Errno 2] No such file or directory

  juliema/aTRAM#314 · Filter by author danielyao12 opened on Jul 2, 2022
  2

• using a different genetic code on stitcher

  juliema/aTRAM#313 · Filter by author jacksonhturner opened on Jun 30, 2022
  1

• stitcher does not recognise contig file

  juliema/aTRAM#312 · Filter by author Upasana1991 opened on May 28, 2022

• how to merge many .fa files to one single target file containing list of amino acids

  juliema/aTRAM#311 · Filter by author Upasana1991 opened on May 14, 2022
  2

• Dist utils is being removed in Python 3.12

  juliema/aTRAM#309 · Filter by author rafelafrance opened on Apr 8, 2022
  

• Install in conda environment

  juliema/aTRAM#307 · Filter by author RvV1979 opened on Jan 2, 2022
  2

• meaning of node number?

  juliema/aTRAM#306 · Filter by author juliadupin opened on Dec 10, 2021

• timeout error in atram.py

  juliema/aTRAM#304 · Filter by author senramvx opened on Jul 3, 2021
  2

• upgrade to latest Spades version

  juliema/aTRAM#291 · Filter by author juliema opened on Jun 26, 2020

• Feature request: Checkpointing

  juliema/aTRAM#258 · Filter by author HeatherKates opened on Jul 15, 2019
  4